miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 101595 0.67 0.798306
Target:  5'- cGCgCCGuGAGCUggaGCGCGCCa-UCGCCa -3'
miRNA:   3'- cUG-GGC-UUCGGa--UGCGCGGgcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 102838 0.66 0.80695
Target:  5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3'
miRNA:   3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5'
24372 3' -58.8 NC_005264.1 + 30357 0.66 0.815445
Target:  5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3'
miRNA:   3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 157570 0.66 0.831958
Target:  5'- cGCCaCGAGGCCgggcuuggGCGCuucCCCGUaGCCc -3'
miRNA:   3'- cUGG-GCUUCGGa-------UGCGc--GGGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 145147 0.67 0.761473
Target:  5'- cACCCGAcacgagccgccgcGGCCUcgGCuGCGCCUGagGCUa -3'
miRNA:   3'- cUGGGCU-------------UCGGA--UG-CGCGGGCagUGG- -5'
24372 3' -58.8 NC_005264.1 + 137908 0.67 0.780601
Target:  5'- gGACCCGcAGCCggGCGauaaGaUCgCGUCACCc -3'
miRNA:   3'- -CUGGGCuUCGGa-UGCg---C-GG-GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 142622 0.66 0.80695
Target:  5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3'
miRNA:   3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 21251 0.66 0.839961
Target:  5'- cGGCUCG-AGUgUGCGCGCCgCGgaggugguaaCGCCa -3'
miRNA:   3'- -CUGGGCuUCGgAUGCGCGG-GCa---------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 39187 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 139423 0.66 0.80695
Target:  5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3'
miRNA:   3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 2841 0.67 0.798306
Target:  5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3'
miRNA:   3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 42466 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 223 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 3264 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 36958 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 45861 0.67 0.753125
Target:  5'- aGACUUcGAGUCUGCGCGCCgccaaugcaagCGaCACCa -3'
miRNA:   3'- -CUGGGcUUCGGAUGCGCGG-----------GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 103815 0.67 0.753125
Target:  5'- gGACCgCGggGCU--UGCGCUCGauUCGCUg -3'
miRNA:   3'- -CUGG-GCuuCGGauGCGCGGGC--AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 100616 0.67 0.762396
Target:  5'- cGAcCCCGAagcGGCCgcggaGCGCGCCC-UCAa- -3'
miRNA:   3'- -CU-GGGCU---UCGGa----UGCGCGGGcAGUgg -5'
24372 3' -58.8 NC_005264.1 + 39602 0.67 0.780601
Target:  5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3'
miRNA:   3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.