miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 147078 0.67 0.762396
Target:  5'- cGCCCGGAGCC-ACGCucGCgCG-CACa -3'
miRNA:   3'- cUGGGCUUCGGaUGCG--CGgGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 142622 0.66 0.80695
Target:  5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3'
miRNA:   3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 21251 0.66 0.839961
Target:  5'- cGGCUCG-AGUgUGCGCGCCgCGgaggugguaaCGCCa -3'
miRNA:   3'- -CUGGGCuUCGgAUGCGCGG-GCa---------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 16914 0.67 0.762396
Target:  5'- aGGCCCau-GCCcGCGCuGaCCCGcCGCCg -3'
miRNA:   3'- -CUGGGcuuCGGaUGCG-C-GGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 129150 0.69 0.682949
Target:  5'- cGGCUCGGAGCgaUGCGCguuagccacgaucaGCCgGUUACCu -3'
miRNA:   3'- -CUGGGCUUCGg-AUGCG--------------CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 36958 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 50318 0.68 0.715126
Target:  5'- cGGCCUGGAGCCgcgagUACGCGgC-GUCgACCu -3'
miRNA:   3'- -CUGGGCUUCGG-----AUGCGCgGgCAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 7995 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 17551 0.68 0.743755
Target:  5'- aACCgGAAGCCUAgacCGCGgccucCCCGU-GCCa -3'
miRNA:   3'- cUGGgCUUCGGAU---GCGC-----GGGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 35424 0.68 0.743755
Target:  5'- aGCuCCGGcAGCUUcaACGCGCCgCGUCcggcGCCg -3'
miRNA:   3'- cUG-GGCU-UCGGA--UGCGCGG-GCAG----UGG- -5'
24372 3' -58.8 NC_005264.1 + 45861 0.67 0.753125
Target:  5'- aGACUUcGAGUCUGCGCGCCgccaaugcaagCGaCACCa -3'
miRNA:   3'- -CUGGGcUUCGGAUGCGCGG-----------GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 103815 0.67 0.753125
Target:  5'- gGACCgCGggGCU--UGCGCUCGauUCGCUg -3'
miRNA:   3'- -CUGG-GCuuCGGauGCGCGGGC--AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 148934 0.67 0.771557
Target:  5'- -uCCUGGAcGUUcGCGC-CCCGUCGCCu -3'
miRNA:   3'- cuGGGCUU-CGGaUGCGcGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 39187 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 101595 0.67 0.798306
Target:  5'- cGCgCCGuGAGCUggaGCGCGCCa-UCGCCa -3'
miRNA:   3'- cUG-GGC-UUCGGa--UGCGCGGgcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 102838 0.66 0.80695
Target:  5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3'
miRNA:   3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5'
24372 3' -58.8 NC_005264.1 + 42466 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 223 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 3264 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.