miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 106580 0.67 0.753125
Target:  5'- uGACUCGGAGg--ACGaUGCCCGcCACCu -3'
miRNA:   3'- -CUGGGCUUCggaUGC-GCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 128701 1.12 0.001186
Target:  5'- cGACCCGAAGCCUACGCGCCCGUCACCa -3'
miRNA:   3'- -CUGGGCUUCGGAUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 97388 0.66 0.812065
Target:  5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3'
miRNA:   3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 139423 0.66 0.80695
Target:  5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3'
miRNA:   3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 101595 0.67 0.798306
Target:  5'- cGCgCCGuGAGCUggaGCGCGCCa-UCGCCa -3'
miRNA:   3'- cUG-GGC-UUCGGa--UGCGCGGgcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 21483 0.67 0.798306
Target:  5'- -uCCUGAGGCUUugGCGUaugugaCGUgggCACCg -3'
miRNA:   3'- cuGGGCUUCGGAugCGCGg-----GCA---GUGG- -5'
24372 3' -58.8 NC_005264.1 + 38765 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 100616 0.67 0.762396
Target:  5'- cGAcCCCGAagcGGCCgcggaGCGCGCCC-UCAa- -3'
miRNA:   3'- -CU-GGGCU---UCGGa----UGCGCGGGcAGUgg -5'
24372 3' -58.8 NC_005264.1 + 147078 0.67 0.762396
Target:  5'- cGCCCGGAGCC-ACGCucGCgCG-CACa -3'
miRNA:   3'- cUGGGCUUCGGaUGCG--CGgGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 43897 0.73 0.454399
Target:  5'- gGGCgCCGGAGaCgauaGCGCGgCCGUCGCCu -3'
miRNA:   3'- -CUG-GGCUUCgGa---UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 82123 0.71 0.547788
Target:  5'- uACCUGuauauaguacuAAGCggUGCGCGCCCGUUGCCu -3'
miRNA:   3'- cUGGGC-----------UUCGg-AUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 12190 0.71 0.548757
Target:  5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3'
miRNA:   3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 75381 0.68 0.743755
Target:  5'- cAUUCGGAGUCguggUGCGCGCCacCGUCugCg -3'
miRNA:   3'- cUGGGCUUCGG----AUGCGCGG--GCAGugG- -5'
24372 3' -58.8 NC_005264.1 + 33931 0.68 0.734292
Target:  5'- aGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3'
miRNA:   3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5'
24372 3' -58.8 NC_005264.1 + 50318 0.68 0.715126
Target:  5'- cGGCCUGGAGCCgcgagUACGCGgC-GUCgACCu -3'
miRNA:   3'- -CUGGGCUUCGG-----AUGCGCgGgCAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 129150 0.69 0.682949
Target:  5'- cGGCUCGGAGCgaUGCGCguuagccacgaucaGCCgGUUACCu -3'
miRNA:   3'- -CUGGGCUUCGg-AUGCG--------------CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 106421 0.69 0.646373
Target:  5'- aGACCCGAAGCUcgACgGCGCCgCGcUCGa- -3'
miRNA:   3'- -CUGGGCUUCGGa-UG-CGCGG-GC-AGUgg -5'
24372 3' -58.8 NC_005264.1 + 158390 0.7 0.586908
Target:  5'- cGCCUaugGGAGCCguauaugccCGcCGCCCGUCACUa -3'
miRNA:   3'- cUGGG---CUUCGGau-------GC-GCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 145147 0.67 0.761473
Target:  5'- cACCCGAcacgagccgccgcGGCCUcgGCuGCGCCUGagGCUa -3'
miRNA:   3'- cUGGGCU-------------UCGGA--UG-CGCGGGCagUGG- -5'
24372 3' -58.8 NC_005264.1 + 122291 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.