miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 35382 0.66 0.815445
Target:  5'- aACCCGu--CCUACGCGCCaugaaCGUCGa- -3'
miRNA:   3'- cUGGGCuucGGAUGCGCGG-----GCAGUgg -5'
24372 3' -58.8 NC_005264.1 + 161493 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 27796 0.66 0.80695
Target:  5'- aGCUCGAAGCCcAUGaaUuuGUCACCg -3'
miRNA:   3'- cUGGGCUUCGGaUGCgcGggCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 79891 0.66 0.814602
Target:  5'- cGGCUC-AGGCCUggucuuuGCGUGCgCGUgGCCg -3'
miRNA:   3'- -CUGGGcUUCGGA-------UGCGCGgGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 67478 0.72 0.509526
Target:  5'- aACCCGAGGCCgggcCGcCGCCC--CGCCg -3'
miRNA:   3'- cUGGGCUUCGGau--GC-GCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 89235 0.66 0.815445
Target:  5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3'
miRNA:   3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 110725 0.66 0.815445
Target:  5'- cACCgGAGGCCUccugcucgcuuCGCGgCCuUCGCCg -3'
miRNA:   3'- cUGGgCUUCGGAu----------GCGCgGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 9028 0.68 0.734292
Target:  5'- -uCCCGAcGCgUuCGCGCCUggcuuggggaaaGUCACCg -3'
miRNA:   3'- cuGGGCUuCGgAuGCGCGGG------------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 145700 0.68 0.734292
Target:  5'- -gUCCGAc-CCUGCGCGCCCaa-GCCu -3'
miRNA:   3'- cuGGGCUucGGAUGCGCGGGcagUGG- -5'
24372 3' -58.8 NC_005264.1 + 87712 0.68 0.734292
Target:  5'- gGAUgCCGAGGCCUugGUGgCUuUCAUCg -3'
miRNA:   3'- -CUG-GGCUUCGGAugCGCgGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 153219 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 127022 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 125272 0.7 0.586908
Target:  5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3'
miRNA:   3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 122291 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 120958 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 104152 0.68 0.724746
Target:  5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3'
miRNA:   3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 149384 0.66 0.815445
Target:  5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3'
miRNA:   3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 119250 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 122647 0.66 0.815445
Target:  5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3'
miRNA:   3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 114441 0.66 0.815445
Target:  5'- cACCCGcuccuGGCC-GC-CGCCCGaCGCCc -3'
miRNA:   3'- cUGGGCu----UCGGaUGcGCGGGCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.