miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 79891 0.66 0.814602
Target:  5'- cGGCUC-AGGCCUggucuuuGCGUGCgCGUgGCCg -3'
miRNA:   3'- -CUGGGcUUCGGA-------UGCGCGgGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 35382 0.66 0.815445
Target:  5'- aACCCGu--CCUACGCGCCaugaaCGUCGa- -3'
miRNA:   3'- cUGGGCuucGGAUGCGCGG-----GCAGUgg -5'
24372 3' -58.8 NC_005264.1 + 89235 0.66 0.815445
Target:  5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3'
miRNA:   3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 122291 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 120958 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 110725 0.66 0.815445
Target:  5'- cACCgGAGGCCUccugcucgcuuCGCGgCCuUCGCCg -3'
miRNA:   3'- cUGGgCUUCGGAu----------GCGCgGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 119250 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 62922 0.67 0.798306
Target:  5'- aGCCgCGcGGGCUUGCGCGgCCGcaaGCCg -3'
miRNA:   3'- cUGG-GC-UUCGGAUGCGCgGGCag-UGG- -5'
24372 3' -58.8 NC_005264.1 + 8694 0.67 0.797433
Target:  5'- aACCCcuuGAAGaacucgcUCUGCGCGCgCGUgGCCg -3'
miRNA:   3'- cUGGG---CUUC-------GGAUGCGCGgGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 104152 0.68 0.724746
Target:  5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3'
miRNA:   3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 87712 0.68 0.734292
Target:  5'- gGAUgCCGAGGCCUugGUGgCUuUCAUCg -3'
miRNA:   3'- -CUG-GGCUUCGGAugCGCgGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 145700 0.68 0.734292
Target:  5'- -gUCCGAc-CCUGCGCGCCCaa-GCCu -3'
miRNA:   3'- cuGGGCUucGGAUGCGCGGGcagUGG- -5'
24372 3' -58.8 NC_005264.1 + 9028 0.68 0.734292
Target:  5'- -uCCCGAcGCgUuCGCGCCUggcuuggggaaaGUCACCg -3'
miRNA:   3'- cuGGGCUuCGgAuGCGCGGG------------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 24216 0.67 0.780601
Target:  5'- --gCCGAAGCCaGCGCGCCgGgauaguaagaCACUc -3'
miRNA:   3'- cugGGCUUCGGaUGCGCGGgCa---------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 158629 0.67 0.780601
Target:  5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3'
miRNA:   3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 137153 0.67 0.780601
Target:  5'- ---gCGggGCaUGCGCGuCCCGUC-CCu -3'
miRNA:   3'- cuggGCuuCGgAUGCGC-GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 65463 0.67 0.78952
Target:  5'- cGGCCUGcGGGCCUGCGaGCUCGcaugCACg -3'
miRNA:   3'- -CUGGGC-UUCGGAUGCgCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 158214 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 42769 0.67 0.78952
Target:  5'- -uCCCGcuAGCCg--GCGUCCGcCACCu -3'
miRNA:   3'- cuGGGCu-UCGGaugCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 114441 0.66 0.815445
Target:  5'- cACCCGcuccuGGCC-GC-CGCCCGaCGCCc -3'
miRNA:   3'- cUGGGCu----UCGGaUGcGCGGGCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.