Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 119250 | 0.66 | 0.815445 |
Target: 5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3' miRNA: 3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 30357 | 0.66 | 0.815445 |
Target: 5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3' miRNA: 3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 3620 | 0.66 | 0.815445 |
Target: 5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3' miRNA: 3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 42466 | 0.66 | 0.815445 |
Target: 5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3' miRNA: 3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 106959 | 0.66 | 0.815445 |
Target: 5'- gGAUCUGAGGCCUguuGCGCuGUCUGaUC-CCa -3' miRNA: 3'- -CUGGGCUUCGGA---UGCG-CGGGC-AGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 223 | 0.66 | 0.815445 |
Target: 5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3' miRNA: 3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 149384 | 0.66 | 0.815445 |
Target: 5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3' miRNA: 3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 122647 | 0.66 | 0.815445 |
Target: 5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3' miRNA: 3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 110725 | 0.66 | 0.815445 |
Target: 5'- cACCgGAGGCCUccugcucgcuuCGCGgCCuUCGCCg -3' miRNA: 3'- cUGGgCUUCGGAu----------GCGCgGGcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 114441 | 0.66 | 0.815445 |
Target: 5'- cACCCGcuccuGGCC-GC-CGCCCGaCGCCc -3' miRNA: 3'- cUGGGCu----UCGGaUGcGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 89235 | 0.66 | 0.815445 |
Target: 5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3' miRNA: 3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 161493 | 0.66 | 0.815445 |
Target: 5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3' miRNA: 3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 35382 | 0.66 | 0.815445 |
Target: 5'- aACCCGu--CCUACGCGCCaugaaCGUCGa- -3' miRNA: 3'- cUGGGCuucGGAUGCGCGG-----GCAGUgg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 79891 | 0.66 | 0.814602 |
Target: 5'- cGGCUC-AGGCCUggucuuuGCGUGCgCGUgGCCg -3' miRNA: 3'- -CUGGGcUUCGGA-------UGCGCGgGCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 97388 | 0.66 | 0.812065 |
Target: 5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3' miRNA: 3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 154899 | 0.66 | 0.807806 |
Target: 5'- aGACgCCGcGGCCguggacgacgcguggACGCGCgCGUUGCUa -3' miRNA: 3'- -CUG-GGCuUCGGa--------------UGCGCGgGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 142622 | 0.66 | 0.80695 |
Target: 5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3' miRNA: 3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 102838 | 0.66 | 0.80695 |
Target: 5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3' miRNA: 3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 27796 | 0.66 | 0.80695 |
Target: 5'- aGCUCGAAGCCcAUGaaUuuGUCACCg -3' miRNA: 3'- cUGGGCUUCGGaUGCgcGggCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 139423 | 0.66 | 0.80695 |
Target: 5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3' miRNA: 3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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