miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 5' -49.3 NC_005264.1 + 52201 0.73 0.900878
Target:  5'- uGAGGGCCGUGGggCGCGGugg-CGCGa -3'
miRNA:   3'- gCUUCCGGUACCa-GUGUUucaaGUGC- -5'
24372 5' -49.3 NC_005264.1 + 34648 0.66 0.997829
Target:  5'- ---cGGCCAccGGUCGCGAGGUaacaaaggaagagaUCGCu -3'
miRNA:   3'- gcuuCCGGUa-CCAGUGUUUCA--------------AGUGc -5'
24372 5' -49.3 NC_005264.1 + 150776 0.67 0.997085
Target:  5'- aGggGcGCCuuUGGcUCGCAccgggauGGUUCGCGg -3'
miRNA:   3'- gCuuC-CGGu-ACC-AGUGUu------UCAAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 36317 0.67 0.996203
Target:  5'- -cGAGGCgAUGGuuagugagugucuucUCAgGAAGUUCAUGa -3'
miRNA:   3'- gcUUCCGgUACC---------------AGUgUUUCAAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 120240 0.68 0.993597
Target:  5'- ---cGGCCAUGGcUGCGGGGUUgCACa -3'
miRNA:   3'- gcuuCCGGUACCaGUGUUUCAA-GUGc -5'
24372 5' -49.3 NC_005264.1 + 131220 0.68 0.992605
Target:  5'- -cGAGG-CAUGGUCGCAGGGcgaugCGCGc -3'
miRNA:   3'- gcUUCCgGUACCAGUGUUUCaa---GUGC- -5'
24372 5' -49.3 NC_005264.1 + 29494 0.68 0.992605
Target:  5'- gGAGGGCCGcGGUCucu-AGUUC-CGa -3'
miRNA:   3'- gCUUCCGGUaCCAGuguuUCAAGuGC- -5'
24372 5' -49.3 NC_005264.1 + 130921 0.68 0.990253
Target:  5'- gCGAGGGCCGUGGgaaaaugccCGCAGAuuuuccCACGg -3'
miRNA:   3'- -GCUUCCGGUACCa--------GUGUUUcaa---GUGC- -5'
24372 5' -49.3 NC_005264.1 + 50264 0.7 0.96878
Target:  5'- uGggGacGCCAUGGcCGCGGAGaUCACc -3'
miRNA:   3'- gCuuC--CGGUACCaGUGUUUCaAGUGc -5'
24372 5' -49.3 NC_005264.1 + 156468 0.71 0.965533
Target:  5'- aCGAGcGGC--UGGUCGCcGAGUUCAUGc -3'
miRNA:   3'- -GCUU-CCGguACCAGUGuUUCAAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 136232 0.71 0.954388
Target:  5'- gGAGGGCCGaGGUgGCGAcGgaCACGg -3'
miRNA:   3'- gCUUCCGGUaCCAgUGUUuCaaGUGC- -5'
24372 5' -49.3 NC_005264.1 + 35286 0.73 0.919633
Target:  5'- ---cGGCCGUGGUcCugAcuGUUCACGa -3'
miRNA:   3'- gcuuCCGGUACCA-GugUuuCAAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 152964 0.73 0.913637
Target:  5'- gGAAGGCCGUGGcgCGCcGGGacCGCGc -3'
miRNA:   3'- gCUUCCGGUACCa-GUGuUUCaaGUGC- -5'
24372 5' -49.3 NC_005264.1 + 100448 0.67 0.997544
Target:  5'- gGAGGGCgCA-GGUCAauggcccAAGUUCGCu -3'
miRNA:   3'- gCUUCCG-GUaCCAGUgu-----UUCAAGUGc -5'
24372 5' -49.3 NC_005264.1 + 77995 0.67 0.997544
Target:  5'- aCGAAGGCCGcGaUCGCGGGcGaUCACGu -3'
miRNA:   3'- -GCUUCCGGUaCcAGUGUUU-CaAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 156907 0.66 0.997942
Target:  5'- gCGGguucGGGCCGUGGUUAgAuAGcgccUCGCGa -3'
miRNA:   3'- -GCU----UCCGGUACCAGUgUuUCa---AGUGC- -5'
24372 5' -49.3 NC_005264.1 + 14833 0.66 0.998284
Target:  5'- aCGgcGGCUAUGGcgacgaggacUC-CAGAGcUCACGa -3'
miRNA:   3'- -GCuuCCGGUACC----------AGuGUUUCaAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 85674 0.66 0.998577
Target:  5'- -uAAGGCgAccUGGcaaGCGGAGUUCGCGg -3'
miRNA:   3'- gcUUCCGgU--ACCag-UGUUUCAAGUGC- -5'
24372 5' -49.3 NC_005264.1 + 100735 0.66 0.998803
Target:  5'- aGAGGGCgcUGGUCGagcucgcCGAGGcgUCACGa -3'
miRNA:   3'- gCUUCCGguACCAGU-------GUUUCa-AGUGC- -5'
24372 5' -49.3 NC_005264.1 + 128735 0.95 0.09639
Target:  5'- gCGAAGG-CAUGGUCACAAAGUUCACGu -3'
miRNA:   3'- -GCUUCCgGUACCAGUGUUUCAAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.