miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 87603 0.66 0.877856
Target:  5'- cGGCaaACGCGGAcgaccugGCCGCGC-CA-GAGg -3'
miRNA:   3'- -UCG--UGCGCCUaa-----UGGCGCGcGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 68025 0.67 0.840084
Target:  5'- gAGCGCcaaagaGCGGAUaACCGCuuccGUGCccgACGAGg -3'
miRNA:   3'- -UCGUG------CGCCUAaUGGCG----CGCG---UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 142029 0.67 0.840084
Target:  5'- cGCGCGauuGGcgUGCaugGCGUGCACGGu -3'
miRNA:   3'- uCGUGCg--CCuaAUGg--CGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 84449 0.67 0.848032
Target:  5'- aAGC-UGUuccaGAUUGCCGCGUGCAuCGGGu -3'
miRNA:   3'- -UCGuGCGc---CUAAUGGCGCGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 119772 0.67 0.848032
Target:  5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 20268 0.67 0.848032
Target:  5'- cGGCcuCGCGGAggggACCGUcuGCGCGCu-- -3'
miRNA:   3'- -UCGu-GCGCCUaa--UGGCG--CGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 159539 0.67 0.848032
Target:  5'- cGGCGCGCGauc--CCGCGCGagcuCACGAc -3'
miRNA:   3'- -UCGUGCGCcuaauGGCGCGC----GUGCUc -5'
24373 3' -57.2 NC_005264.1 + 149648 0.67 0.823645
Target:  5'- cGGCgGCGaCGGAU--CCGCGCGCagcGCGuAGg -3'
miRNA:   3'- -UCG-UGC-GCCUAauGGCGCGCG---UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 85830 0.67 0.847245
Target:  5'- aAGCGCGCGcucagUACCgggucuuGCGCGCACu-- -3'
miRNA:   3'- -UCGUGCGCcua--AUGG-------CGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 104611 0.67 0.840887
Target:  5'- cGCGCaCGGGcaaaacauaucccaACCaGCGCGCGCGGGg -3'
miRNA:   3'- uCGUGcGCCUaa------------UGG-CGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 120487 0.67 0.840084
Target:  5'- cGGUGCGCGGAguagGUgGCGgGgGCGAGg -3'
miRNA:   3'- -UCGUGCGCCUaa--UGgCGCgCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 156903 0.67 0.848032
Target:  5'- cGC-CGCGGGUUcggGCCGUgguuagauaGCGCcucGCGAGu -3'
miRNA:   3'- uCGuGCGCCUAA---UGGCG---------CGCG---UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 36656 0.67 0.848032
Target:  5'- cGUGCGCGGAUggaccugGCCGCGaC-CACGu- -3'
miRNA:   3'- uCGUGCGCCUAa------UGGCGC-GcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 746 0.67 0.848032
Target:  5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 135602 0.67 0.848032
Target:  5'- uAGagaGCGCaGAagGCCGCGCGCuauuCGAc -3'
miRNA:   3'- -UCg--UGCGcCUaaUGGCGCGCGu---GCUc -5'
24373 3' -57.2 NC_005264.1 + 40790 0.67 0.815168
Target:  5'- cGGCGCcgagaGCGGAgccgcUUGCCGCGggguCGC-CGAGa -3'
miRNA:   3'- -UCGUG-----CGCCU-----AAUGGCGC----GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 62574 0.67 0.815168
Target:  5'- cGCuGCGCGGAUcgauaaaauugACCGCGCGaaguaGCGGc -3'
miRNA:   3'- uCG-UGCGCCUAa----------UGGCGCGCg----UGCUc -5'
24373 3' -57.2 NC_005264.1 + 122437 0.67 0.818579
Target:  5'- cGGUGCGCGGGggagggacguaggGCCGCGCcCGCGc- -3'
miRNA:   3'- -UCGUGCGCCUaa-----------UGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 156432 0.67 0.818579
Target:  5'- uGUACGUGGAggaguucggcaugGCCGUGgagcaGCACGAGc -3'
miRNA:   3'- uCGUGCGCCUaa-----------UGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 162502 0.67 0.823645
Target:  5'- cGGUugGCGGuugucgccAUUGCCGCGauUugGGGg -3'
miRNA:   3'- -UCGugCGCC--------UAAUGGCGCgcGugCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.