Results 81 - 100 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 5529 | 0.68 | 0.797738 |
Target: 5'- cAGC-CGCGGcgUcUCGCGCGgaGCGGGu -3' miRNA: 3'- -UCGuGCGCCuaAuGGCGCGCg-UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 4246 | 0.68 | 0.80653 |
Target: 5'- ---cUGCGGAgccucUUGCCGcCGCGCAgCGAGu -3' miRNA: 3'- ucguGCGCCU-----AAUGGC-GCGCGU-GCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 104846 | 0.68 | 0.797738 |
Target: 5'- gGGC-CGCuGAgccacgGCCGC-CGCGCGGGg -3' miRNA: 3'- -UCGuGCGcCUaa----UGGCGcGCGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 97190 | 0.68 | 0.797738 |
Target: 5'- gGGCAgGUcucGGuauugGUUACCgguGCGCGCGCGGGu -3' miRNA: 3'- -UCGUgCG---CC-----UAAUGG---CGCGCGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 81067 | 0.68 | 0.797738 |
Target: 5'- aAGCAgaCGGuaUGCUGCGCGCACGu- -3' miRNA: 3'- -UCGUgcGCCuaAUGGCGCGCGUGCuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 132448 | 0.68 | 0.7888 |
Target: 5'- cGGCGCGCGacc-GCCGC-CGC-CGAGa -3' miRNA: 3'- -UCGUGCGCcuaaUGGCGcGCGuGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 132221 | 0.68 | 0.7888 |
Target: 5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3' miRNA: 3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 9923 | 0.68 | 0.7888 |
Target: 5'- cGCGacUGCGGGcuUUGCgGCGCGC-UGAGa -3' miRNA: 3'- uCGU--GCGCCU--AAUGgCGCGCGuGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 6726 | 0.68 | 0.7888 |
Target: 5'- uAGCGuCGCGGuacuCCGCGgcgugGCGCGGGa -3' miRNA: 3'- -UCGU-GCGCCuaauGGCGCg----CGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 68981 | 0.68 | 0.761198 |
Target: 5'- cGGCACGacuacccgcCGcAUUAUUGCGCGCACGGc -3' miRNA: 3'- -UCGUGC---------GCcUAAUGGCGCGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 123774 | 0.68 | 0.761198 |
Target: 5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3' miRNA: 3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 84328 | 0.68 | 0.761198 |
Target: 5'- cGGCGCGauGGUUacuggccucACCGCGUGCACcGGc -3' miRNA: 3'- -UCGUGCgcCUAA---------UGGCGCGCGUGcUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 145922 | 0.68 | 0.761198 |
Target: 5'- cGGCG-GCGGGUcAgCGCGgGCAUGGGc -3' miRNA: 3'- -UCGUgCGCCUAaUgGCGCgCGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 59976 | 0.68 | 0.797738 |
Target: 5'- cAGcCACGCGGcggugGCCGCGa--GCGAGa -3' miRNA: 3'- -UC-GUGCGCCuaa--UGGCGCgcgUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 142785 | 0.68 | 0.7888 |
Target: 5'- cGCuACGCGGG--GCCGCGUG-GCGAc -3' miRNA: 3'- uCG-UGCGCCUaaUGGCGCGCgUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 158334 | 0.68 | 0.7888 |
Target: 5'- uGGCACGCGGAacacaagcgGCCGCacCGCGCc-- -3' miRNA: 3'- -UCGUGCGCCUaa-------UGGCGc-GCGUGcuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 13194 | 0.68 | 0.7888 |
Target: 5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3' miRNA: 3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 13421 | 0.68 | 0.7888 |
Target: 5'- cGGCGCGCGacc-GCCGC-CGC-CGAGa -3' miRNA: 3'- -UCGUGCGCcuaaUGGCGcGCGuGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 82369 | 0.68 | 0.7888 |
Target: 5'- aGGCGCGUcGAUccggUGCCGgGCGCAgGGc -3' miRNA: 3'- -UCGUGCGcCUA----AUGGCgCGCGUgCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 28043 | 0.68 | 0.7888 |
Target: 5'- cGGCGCGCGcGAc-GCCGgguaaaaGCGCGCGGa -3' miRNA: 3'- -UCGUGCGC-CUaaUGGCg------CGCGUGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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