miRNA display CGI


Results 61 - 80 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 116267 0.68 0.770522
Target:  5'- cGCACGCGcGAcuuggaaGCCGUG-GCGCGGGc -3'
miRNA:   3'- uCGUGCGC-CUaa-----UGGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 128089 0.68 0.761198
Target:  5'- uAGCGacaGCGGcg-ACCgGCGCGC-CGGGa -3'
miRNA:   3'- -UCGUg--CGCCuaaUGG-CGCGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 4748 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 131609 0.68 0.761198
Target:  5'- cGGCGCGCGug--GgCGCGCGCG-GAGa -3'
miRNA:   3'- -UCGUGCGCcuaaUgGCGCGCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 156116 0.68 0.770522
Target:  5'- cGC-CGCGGAgUACCGCGaCGCuAgGAc -3'
miRNA:   3'- uCGuGCGCCUaAUGGCGC-GCG-UgCUc -5'
24373 3' -57.2 NC_005264.1 + 56911 0.68 0.779725
Target:  5'- gAGCAUuaugggGCGGcgUACgUGCgugGCGCACGGGg -3'
miRNA:   3'- -UCGUG------CGCCuaAUG-GCG---CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 84328 0.68 0.761198
Target:  5'- cGGCGCGauGGUUacuggccucACCGCGUGCACcGGc -3'
miRNA:   3'- -UCGUGCgcCUAA---------UGGCGCGCGUGcUC- -5'
24373 3' -57.2 NC_005264.1 + 123774 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 6726 0.68 0.7888
Target:  5'- uAGCGuCGCGGuacuCCGCGgcgugGCGCGGGa -3'
miRNA:   3'- -UCGU-GCGCCuaauGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 28043 0.68 0.7888
Target:  5'- cGGCGCGCGcGAc-GCCGgguaaaaGCGCGCGGa -3'
miRNA:   3'- -UCGUGCGC-CUaaUGGCg------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 59976 0.68 0.797738
Target:  5'- cAGcCACGCGGcggugGCCGCGa--GCGAGa -3'
miRNA:   3'- -UC-GUGCGCCuaa--UGGCGCgcgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 87528 0.68 0.797738
Target:  5'- uGGCGCGCGGcagaUGCUGCaGCGUggGCGuAGa -3'
miRNA:   3'- -UCGUGCGCCua--AUGGCG-CGCG--UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 5529 0.68 0.797738
Target:  5'- cAGC-CGCGGcgUcUCGCGCGgaGCGGGu -3'
miRNA:   3'- -UCGuGCGCCuaAuGGCGCGCg-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 88701 0.68 0.797738
Target:  5'- cAGCuGCGUGGcgUGCaUGC-CGCAUGAGg -3'
miRNA:   3'- -UCG-UGCGCCuaAUG-GCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 4246 0.68 0.80653
Target:  5'- ---cUGCGGAgccucUUGCCGcCGCGCAgCGAGu -3'
miRNA:   3'- ucguGCGCCU-----AAUGGC-GCGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 68981 0.68 0.761198
Target:  5'- cGGCACGacuacccgcCGcAUUAUUGCGCGCACGGc -3'
miRNA:   3'- -UCGUGC---------GCcUAAUGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 13194 0.68 0.7888
Target:  5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3'
miRNA:   3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 45741 0.68 0.80653
Target:  5'- cAGCGCGCGGucgUGCCGUaucuaGCACa-- -3'
miRNA:   3'- -UCGUGCGCCua-AUGGCGcg---CGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 104846 0.68 0.797738
Target:  5'- gGGC-CGCuGAgccacgGCCGC-CGCGCGGGg -3'
miRNA:   3'- -UCGuGCGcCUaa----UGGCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 81067 0.68 0.797738
Target:  5'- aAGCAgaCGGuaUGCUGCGCGCACGu- -3'
miRNA:   3'- -UCGUgcGCCuaAUGGCGCGCGUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.