miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 46783 0.69 0.703234
Target:  5'- gGGCGCGU----UACUGCGCcccGCACGAGg -3'
miRNA:   3'- -UCGUGCGccuaAUGGCGCG---CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 25740 0.69 0.713091
Target:  5'- cGguCGCGGAgagGCCagugaugcucacGCGCGUugGGGa -3'
miRNA:   3'- uCguGCGCCUaa-UGG------------CGCGCGugCUC- -5'
24373 3' -57.2 NC_005264.1 + 134987 0.69 0.713091
Target:  5'- cGGCGCauuggGCGGAUgccGCCGCGacagugGCGCGAu -3'
miRNA:   3'- -UCGUG-----CGCCUAa--UGGCGCg-----CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 140546 0.69 0.713091
Target:  5'- aGGCGCGgcugGGAUgGCagaaggGCGCGCGCGGGu -3'
miRNA:   3'- -UCGUGCg---CCUAaUGg-----CGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 111527 0.69 0.713091
Target:  5'- gGGUACaaGUGGcacGCCGaCGUGCACGAGg -3'
miRNA:   3'- -UCGUG--CGCCuaaUGGC-GCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 76345 0.69 0.713091
Target:  5'- uGGcCGCGCGGcg-ACUGCGCGCAgGc- -3'
miRNA:   3'- -UC-GUGCGCCuaaUGGCGCGCGUgCuc -5'
24373 3' -57.2 NC_005264.1 + 5997 0.69 0.722882
Target:  5'- cAGCGCgGCGGuc-GCUGUGCGCACc-- -3'
miRNA:   3'- -UCGUG-CGCCuaaUGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 35985 0.69 0.722882
Target:  5'- gGGgGCGCGGAgagcgaaaCGCGCaGCgACGAGg -3'
miRNA:   3'- -UCgUGCGCCUaaug----GCGCG-CG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 2830 0.69 0.732597
Target:  5'- gGGUugGCGGAggGCCGguCGCGCucGCGc- -3'
miRNA:   3'- -UCGugCGCCUaaUGGC--GCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 121856 0.69 0.732597
Target:  5'- gGGUugGCGGAggGCCGguCGCGCucGCGc- -3'
miRNA:   3'- -UCGugCGCCUaaUGGC--GCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 17286 0.69 0.732597
Target:  5'- gGGCAaacaugGUGGccacgGUUACCGCuaGCGCGAGa -3'
miRNA:   3'- -UCGUg-----CGCC-----UAAUGGCGcgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 121817 0.69 0.742227
Target:  5'- gGGCACGUGGAaggcacaGCgGCGaacaaaaGCGCGGGg -3'
miRNA:   3'- -UCGUGCGCCUaa-----UGgCGCg------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 154552 0.69 0.742227
Target:  5'- uGGCACGCGGAUcuccCCG-GCcuGCaACGAGg -3'
miRNA:   3'- -UCGUGCGCCUAau--GGCgCG--CG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 44268 0.69 0.751764
Target:  5'- cGGCGCGUcac--GCCGCGCGgAUGAGa -3'
miRNA:   3'- -UCGUGCGccuaaUGGCGCGCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 8317 0.69 0.751764
Target:  5'- cGGCACGCuuGUUugCGCGCgGCAUGuGc -3'
miRNA:   3'- -UCGUGCGccUAAugGCGCG-CGUGCuC- -5'
24373 3' -57.2 NC_005264.1 + 84328 0.68 0.761198
Target:  5'- cGGCGCGauGGUUacuggccucACCGCGUGCACcGGc -3'
miRNA:   3'- -UCGUGCgcCUAA---------UGGCGCGCGUGcUC- -5'
24373 3' -57.2 NC_005264.1 + 123774 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 68981 0.68 0.761198
Target:  5'- cGGCACGacuacccgcCGcAUUAUUGCGCGCACGGc -3'
miRNA:   3'- -UCGUGC---------GCcUAAUGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 131609 0.68 0.761198
Target:  5'- cGGCGCGCGug--GgCGCGCGCG-GAGa -3'
miRNA:   3'- -UCGUGCGCcuaaUgGCGCGCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 128089 0.68 0.761198
Target:  5'- uAGCGacaGCGGcg-ACCgGCGCGC-CGGGa -3'
miRNA:   3'- -UCGUg--CGCCuaaUGG-CGCGCGuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.