miRNA display CGI


Results 61 - 80 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 30621 0.67 0.823645
Target:  5'- cGGCgGCGaCGGAU--CCGCGCGCagcGCGuAGg -3'
miRNA:   3'- -UCG-UGC-GCCUAauGGCGCGCG---UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 149648 0.67 0.823645
Target:  5'- cGGCgGCGaCGGAU--CCGCGCGCagcGCGuAGg -3'
miRNA:   3'- -UCG-UGC-GCCUAauGGCGCGCG---UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 16482 0.67 0.823645
Target:  5'- cAGC-CGCGGug-GCCuGCGgGguCGAGg -3'
miRNA:   3'- -UCGuGCGCCuaaUGG-CGCgCguGCUC- -5'
24373 3' -57.2 NC_005264.1 + 162502 0.67 0.823645
Target:  5'- cGGUugGCGGuugucgccAUUGCCGCGauUugGGGg -3'
miRNA:   3'- -UCGugCGCC--------UAAUGGCGCgcGugCUC- -5'
24373 3' -57.2 NC_005264.1 + 68764 0.67 0.823645
Target:  5'- cAGuCACGCGGGacaugUUGCCG-GCGCcaaaGCGAa -3'
miRNA:   3'- -UC-GUGCGCCU-----AAUGGCgCGCG----UGCUc -5'
24373 3' -57.2 NC_005264.1 + 43475 0.67 0.823645
Target:  5'- cGGUugGCGGuugucgccAUUGCCGCGauUugGGGg -3'
miRNA:   3'- -UCGugCGCC--------UAAUGGCGCgcGugCUC- -5'
24373 3' -57.2 NC_005264.1 + 17881 0.67 0.823645
Target:  5'- cGGCGgGCuGAUcUACgGCGCGCACa-- -3'
miRNA:   3'- -UCGUgCGcCUA-AUGgCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 138489 0.67 0.823645
Target:  5'- cGUACcuGCGGcgGUUGCCGCGCGauuucacuCGCGAa -3'
miRNA:   3'- uCGUG--CGCC--UAAUGGCGCGC--------GUGCUc -5'
24373 3' -57.2 NC_005264.1 + 37405 0.67 0.818579
Target:  5'- uGUACGUGGAggaguucggcaugGCCGUGgagcaGCACGAGc -3'
miRNA:   3'- uCGUGCGCCUaa-----------UGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 156432 0.67 0.818579
Target:  5'- uGUACGUGGAggaguucggcaugGCCGUGgagcaGCACGAGc -3'
miRNA:   3'- uCGUGCGCCUaa-----------UGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 122437 0.67 0.818579
Target:  5'- cGGUGCGCGGGggagggacguaggGCCGCGCcCGCGc- -3'
miRNA:   3'- -UCGUGCGCCUaa-----------UGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 3410 0.67 0.818579
Target:  5'- cGGUGCGCGGGggagggacguaggGCCGCGCcCGCGc- -3'
miRNA:   3'- -UCGUGCGCCUaa-----------UGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 109832 0.67 0.815168
Target:  5'- cAGguUGCGGAggcagaggauuUUGcCCGCGaGCGCGAGc -3'
miRNA:   3'- -UCguGCGCCU-----------AAU-GGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 40790 0.67 0.815168
Target:  5'- cGGCGCcgagaGCGGAgccgcUUGCCGCGggguCGC-CGAGa -3'
miRNA:   3'- -UCGUG-----CGCCU-----AAUGGCGC----GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 153092 0.67 0.815168
Target:  5'- gAGCACgGCGGcUUGCCuGC-CGC-CGAGu -3'
miRNA:   3'- -UCGUG-CGCCuAAUGG-CGcGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 62574 0.67 0.815168
Target:  5'- cGCuGCGCGGAUcgauaaaauugACCGCGCGaaguaGCGGc -3'
miRNA:   3'- uCG-UGCGCCUAa----------UGGCGCGCg----UGCUc -5'
24373 3' -57.2 NC_005264.1 + 4246 0.68 0.80653
Target:  5'- ---cUGCGGAgccucUUGCCGcCGCGCAgCGAGu -3'
miRNA:   3'- ucguGCGCCU-----AAUGGC-GCGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 45741 0.68 0.80653
Target:  5'- cAGCGCGCGGucgUGCCGUaucuaGCACa-- -3'
miRNA:   3'- -UCGUGCGCCua-AUGGCGcg---CGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 88701 0.68 0.797738
Target:  5'- cAGCuGCGUGGcgUGCaUGC-CGCAUGAGg -3'
miRNA:   3'- -UCG-UGCGCCuaAUG-GCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 5529 0.68 0.797738
Target:  5'- cAGC-CGCGGcgUcUCGCGCGgaGCGGGu -3'
miRNA:   3'- -UCGuGCGCCuaAuGGCGCGCg-UGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.