miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 37405 0.67 0.818579
Target:  5'- uGUACGUGGAggaguucggcaugGCCGUGgagcaGCACGAGc -3'
miRNA:   3'- uCGUGCGCCUaa-----------UGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 37583 0.66 0.884793
Target:  5'- cGGCAagucuCGCGGcg-GCCGCG-GCGgGGGg -3'
miRNA:   3'- -UCGU-----GCGCCuaaUGGCGCgCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 38158 0.66 0.884793
Target:  5'- cAGCAUGCGugcGAcUACCGCcGCGCuguGGGg -3'
miRNA:   3'- -UCGUGCGC---CUaAUGGCG-CGCGug-CUC- -5'
24373 3' -57.2 NC_005264.1 + 38329 0.66 0.863349
Target:  5'- gGGUugGCGGGcccugGCCGUGaUGCugGGc -3'
miRNA:   3'- -UCGugCGCCUaa---UGGCGC-GCGugCUc -5'
24373 3' -57.2 NC_005264.1 + 38592 0.71 0.599816
Target:  5'- aGGC-CGCGGAagaagagcuucgccUcGCCGCG-GCGCGAGa -3'
miRNA:   3'- -UCGuGCGCCU--------------AaUGGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 40790 0.67 0.815168
Target:  5'- cGGCGCcgagaGCGGAgccgcUUGCCGCGggguCGC-CGAGa -3'
miRNA:   3'- -UCGUG-----CGCCU-----AAUGGCGC----GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 41389 0.66 0.855789
Target:  5'- uGUACGCGuag-GCCGCGCGCugugucuCGGa -3'
miRNA:   3'- uCGUGCGCcuaaUGGCGCGCGu------GCUc -5'
24373 3' -57.2 NC_005264.1 + 42041 0.7 0.682353
Target:  5'- cGCACGCGGccuauccaaucgcGUUGCC-CGCgGCGCGuGg -3'
miRNA:   3'- uCGUGCGCC-------------UAAUGGcGCG-CGUGCuC- -5'
24373 3' -57.2 NC_005264.1 + 43475 0.67 0.823645
Target:  5'- cGGUugGCGGuugucgccAUUGCCGCGauUugGGGg -3'
miRNA:   3'- -UCGugCGCC--------UAAUGGCGCgcGugCUC- -5'
24373 3' -57.2 NC_005264.1 + 44268 0.69 0.751764
Target:  5'- cGGCGCGUcac--GCCGCGCGgAUGAGa -3'
miRNA:   3'- -UCGUGCGccuaaUGGCGCGCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 45543 0.74 0.466853
Target:  5'- cGCACGCGGAgaGCgGCaucGCGCACGc- -3'
miRNA:   3'- uCGUGCGCCUaaUGgCG---CGCGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 45741 0.68 0.80653
Target:  5'- cAGCGCGCGGucgUGCCGUaucuaGCACa-- -3'
miRNA:   3'- -UCGUGCGCCua-AUGGCGcg---CGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 46783 0.69 0.703234
Target:  5'- gGGCGCGU----UACUGCGCcccGCACGAGg -3'
miRNA:   3'- -UCGUGCGccuaAUGGCGCG---CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 47309 0.66 0.877856
Target:  5'- uGGCA-GCGGGgaACUGCcCGCGuCGAGg -3'
miRNA:   3'- -UCGUgCGCCUaaUGGCGcGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 48096 0.72 0.552939
Target:  5'- cGGcCGCGCGGGUU-CUGCacGCGCGCGGc -3'
miRNA:   3'- -UC-GUGCGCCUAAuGGCG--CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 52847 0.69 0.703234
Target:  5'- uGCuACGCGGGa-GCUGCGCGCauACGAc -3'
miRNA:   3'- uCG-UGCGCCUaaUGGCGCGCG--UGCUc -5'
24373 3' -57.2 NC_005264.1 + 54338 0.66 0.855789
Target:  5'- aAGCGCGCGGcgUuuauggcgaGCCuuagaaGCGuCGCGCGGc -3'
miRNA:   3'- -UCGUGCGCCuaA---------UGG------CGC-GCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 55619 0.67 0.831953
Target:  5'- cGGCugGCGccgaAUgccaACCGCGCGCGCc-- -3'
miRNA:   3'- -UCGugCGCc---UAa---UGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 56911 0.68 0.779725
Target:  5'- gAGCAUuaugggGCGGcgUACgUGCgugGCGCACGGGg -3'
miRNA:   3'- -UCGUG------CGCCuaAUG-GCG---CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 58738 0.66 0.891512
Target:  5'- gGGCAucCGCGGcc-GCCGCuGCGCuaucaGAGg -3'
miRNA:   3'- -UCGU--GCGCCuaaUGGCG-CGCGug---CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.