miRNA display CGI


Results 61 - 80 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 59346 0.69 0.703234
Target:  5'- cAGCcuguCGCGGAUcagACUGCGCaCGCGAc -3'
miRNA:   3'- -UCGu---GCGCCUAa--UGGCGCGcGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 59976 0.68 0.797738
Target:  5'- cAGcCACGCGGcggugGCCGCGa--GCGAGa -3'
miRNA:   3'- -UC-GUGCGCCuaa--UGGCGCgcgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 62574 0.67 0.815168
Target:  5'- cGCuGCGCGGAUcgauaaaauugACCGCGCGaaguaGCGGc -3'
miRNA:   3'- uCG-UGCGCCUAa----------UGGCGCGCg----UGCUc -5'
24373 3' -57.2 NC_005264.1 + 65624 0.74 0.457703
Target:  5'- cGGCuCGUGGGUacCCGCGCGCGCa-- -3'
miRNA:   3'- -UCGuGCGCCUAauGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 66182 0.66 0.884793
Target:  5'- gGGUGCGCuaac-GCCGCGCGCgACGGu -3'
miRNA:   3'- -UCGUGCGccuaaUGGCGCGCG-UGCUc -5'
24373 3' -57.2 NC_005264.1 + 66541 0.77 0.291071
Target:  5'- cAGCaACGCGGAc-GCCGagGCGCACGAGc -3'
miRNA:   3'- -UCG-UGCGCCUaaUGGCg-CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 66873 0.66 0.870707
Target:  5'- cGCGCGCGGAgagcaGCCGCGa-CACc-- -3'
miRNA:   3'- uCGUGCGCCUaa---UGGCGCgcGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 68025 0.67 0.840084
Target:  5'- gAGCGCcaaagaGCGGAUaACCGCuuccGUGCccgACGAGg -3'
miRNA:   3'- -UCGUG------CGCCUAaUGGCG----CGCG---UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 68444 0.68 0.779725
Target:  5'- cGCGcCGCGGu---CUGCGCGCG-GAGg -3'
miRNA:   3'- uCGU-GCGCCuaauGGCGCGCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 68764 0.67 0.823645
Target:  5'- cAGuCACGCGGGacaugUUGCCG-GCGCcaaaGCGAa -3'
miRNA:   3'- -UC-GUGCGCCU-----AAUGGCgCGCG----UGCUc -5'
24373 3' -57.2 NC_005264.1 + 68981 0.68 0.761198
Target:  5'- cGGCACGacuacccgcCGcAUUAUUGCGCGCACGGc -3'
miRNA:   3'- -UCGUGC---------GCcUAAUGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 69505 0.67 0.831953
Target:  5'- -cCACGCGGAUUGCgGgggaGUGC-CGGGg -3'
miRNA:   3'- ucGUGCGCCUAAUGgCg---CGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 71613 0.73 0.504352
Target:  5'- gAGCuACGCGGGcUAUCGCGCgaauGCGCGGa -3'
miRNA:   3'- -UCG-UGCGCCUaAUGGCGCG----CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 72190 0.71 0.612901
Target:  5'- cAGCaAUGCGGucu-CCGCGCGCccuuCGGGg -3'
miRNA:   3'- -UCG-UGCGCCuaauGGCGCGCGu---GCUC- -5'
24373 3' -57.2 NC_005264.1 + 72554 0.7 0.683352
Target:  5'- aAGCACGCGGucaaccgcaacuAUUucuucgauaugGCUGgGCGCGCGAu -3'
miRNA:   3'- -UCGUGCGCC------------UAA-----------UGGCgCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 76131 0.79 0.234542
Target:  5'- uGUACGCGGAcggcggcaaagACCGCGCGCgGCGAGu -3'
miRNA:   3'- uCGUGCGCCUaa---------UGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 76345 0.69 0.713091
Target:  5'- uGGcCGCGCGGcg-ACUGCGCGCAgGc- -3'
miRNA:   3'- -UC-GUGCGCCuaaUGGCGCGCGUgCuc -5'
24373 3' -57.2 NC_005264.1 + 77265 0.71 0.602833
Target:  5'- cAGCACGUGGugcacggUGCCGCGCucgaACGAa -3'
miRNA:   3'- -UCGUGCGCCua-----AUGGCGCGcg--UGCUc -5'
24373 3' -57.2 NC_005264.1 + 77313 0.66 0.870707
Target:  5'- cAGguCGCGGGcgaguugguucaUUGCCcuCGCGCGgGAGa -3'
miRNA:   3'- -UCguGCGCCU------------AAUGGc-GCGCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 81067 0.68 0.797738
Target:  5'- aAGCAgaCGGuaUGCUGCGCGCACGu- -3'
miRNA:   3'- -UCGUgcGCCuaAUGGCGCGCGUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.