Results 81 - 100 of 163 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 82369 | 0.68 | 0.7888 |
Target: 5'- aGGCGCGUcGAUccggUGCCGgGCGCAgGGc -3' miRNA: 3'- -UCGUGCGcCUA----AUGGCgCGCGUgCUc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 84328 | 0.68 | 0.761198 |
Target: 5'- cGGCGCGauGGUUacuggccucACCGCGUGCACcGGc -3' miRNA: 3'- -UCGUGCgcCUAA---------UGGCGCGCGUGcUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 84449 | 0.67 | 0.848032 |
Target: 5'- aAGC-UGUuccaGAUUGCCGCGUGCAuCGGGu -3' miRNA: 3'- -UCGuGCGc---CUAAUGGCGCGCGU-GCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 85830 | 0.67 | 0.847245 |
Target: 5'- aAGCGCGCGcucagUACCgggucuuGCGCGCACu-- -3' miRNA: 3'- -UCGUGCGCcua--AUGG-------CGCGCGUGcuc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 86703 | 0.72 | 0.533309 |
Target: 5'- cGCGCGCGGucuUUGCCGCcguccGCGUACa-- -3' miRNA: 3'- uCGUGCGCCu--AAUGGCG-----CGCGUGcuc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 87528 | 0.68 | 0.797738 |
Target: 5'- uGGCGCGCGGcagaUGCUGCaGCGUggGCGuAGa -3' miRNA: 3'- -UCGUGCGCCua--AUGGCG-CGCG--UGC-UC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 87603 | 0.66 | 0.877856 |
Target: 5'- cGGCaaACGCGGAcgaccugGCCGCGC-CA-GAGg -3' miRNA: 3'- -UCG--UGCGCCUaa-----UGGCGCGcGUgCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 87747 | 0.66 | 0.891512 |
Target: 5'- cGGCGC-CGGcgccUGCCGCaGCGcCGCGAa -3' miRNA: 3'- -UCGUGcGCCua--AUGGCG-CGC-GUGCUc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 88701 | 0.68 | 0.797738 |
Target: 5'- cAGCuGCGUGGcgUGCaUGC-CGCAUGAGg -3' miRNA: 3'- -UCG-UGCGCCuaAUG-GCGcGCGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 90651 | 0.67 | 0.831953 |
Target: 5'- gGGCGCGCGGAg-ACCGCauUGCugGcGg -3' miRNA: 3'- -UCGUGCGCCUaaUGGCGc-GCGugCuC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 92415 | 0.7 | 0.692323 |
Target: 5'- aGGCACGCGGGgaACCugaacgaGC-CGCACGGu -3' miRNA: 3'- -UCGUGCGCCUaaUGG-------CGcGCGUGCUc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 95440 | 0.66 | 0.887507 |
Target: 5'- aAGCcguCGUGGAauacgcUACCGCGCcggcgggcgcagcgaGCGCGGGc -3' miRNA: 3'- -UCGu--GCGCCUa-----AUGGCGCG---------------CGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 96333 | 0.73 | 0.523587 |
Target: 5'- gGGCACGCucgcugUACCGCGCcaucgccgGCACGGGa -3' miRNA: 3'- -UCGUGCGccua--AUGGCGCG--------CGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 97190 | 0.68 | 0.797738 |
Target: 5'- gGGCAgGUcucGGuauugGUUACCgguGCGCGCGCGGGu -3' miRNA: 3'- -UCGUgCG---CC-----UAAUGG---CGCGCGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 99587 | 0.66 | 0.877856 |
Target: 5'- aAGCGCaGCGGcaUGCUGgGCGCuuCGAu -3' miRNA: 3'- -UCGUG-CGCCuaAUGGCgCGCGu-GCUc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 101652 | 0.67 | 0.83113 |
Target: 5'- aGGCGCGagucaaGGAUuuucuaucgucauUGCUGCGCgaGCGCGAa -3' miRNA: 3'- -UCGUGCg-----CCUA-------------AUGGCGCG--CGUGCUc -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 102199 | 0.66 | 0.863349 |
Target: 5'- gAGCAgGCGGGgaucaaGCUGCuGCuccuGCGCGAGc -3' miRNA: 3'- -UCGUgCGCCUaa----UGGCG-CG----CGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 104611 | 0.67 | 0.840887 |
Target: 5'- cGCGCaCGGGcaaaacauaucccaACCaGCGCGCGCGGGg -3' miRNA: 3'- uCGUGcGCCUaa------------UGG-CGCGCGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 104846 | 0.68 | 0.797738 |
Target: 5'- gGGC-CGCuGAgccacgGCCGC-CGCGCGGGg -3' miRNA: 3'- -UCGuGCGcCUaa----UGGCGcGCGUGCUC- -5' |
|||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 107220 | 0.71 | 0.612901 |
Target: 5'- gGGUACGCGGA--GCgGUGCGCAaGAa -3' miRNA: 3'- -UCGUGCGCCUaaUGgCGCGCGUgCUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home