miRNA display CGI


Results 101 - 120 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 108467 0.71 0.612901
Target:  5'- cGCGCGgGGAUccggugGCCGCGCGaCGCu-- -3'
miRNA:   3'- uCGUGCgCCUAa-----UGGCGCGC-GUGcuc -5'
24373 3' -57.2 NC_005264.1 + 108607 0.66 0.891512
Target:  5'- uGGCGCGCGGG--GCCGCcuCGaCACa-- -3'
miRNA:   3'- -UCGUGCGCCUaaUGGCGc-GC-GUGcuc -5'
24373 3' -57.2 NC_005264.1 + 109832 0.67 0.815168
Target:  5'- cAGguUGCGGAggcagaggauuUUGcCCGCGaGCGCGAGc -3'
miRNA:   3'- -UCguGCGCCU-----------AAU-GGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 111045 0.73 0.489188
Target:  5'- uGGCucGCGCGGAcucgccggacgaagUGCCGC-CGCGCGAGc -3'
miRNA:   3'- -UCG--UGCGCCUa-------------AUGGCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 111527 0.69 0.713091
Target:  5'- gGGUACaaGUGGcacGCCGaCGUGCACGAGg -3'
miRNA:   3'- -UCGUG--CGCCuaaUGGC-GCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 116267 0.68 0.770522
Target:  5'- cGCACGCGcGAcuuggaaGCCGUG-GCGCGGGc -3'
miRNA:   3'- uCGUGCGC-CUaa-----UGGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 118266 0.68 0.779725
Target:  5'- gAGCugGCGuGGUUGCCG-GCGguCGc- -3'
miRNA:   3'- -UCGugCGC-CUAAUGGCgCGCguGCuc -5'
24373 3' -57.2 NC_005264.1 + 119772 0.67 0.848032
Target:  5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 120173 0.66 0.884793
Target:  5'- cGCACG-GGAcgauccgGCCGCcagucugccgGCGCGCGAu -3'
miRNA:   3'- uCGUGCgCCUaa-----UGGCG----------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 120303 0.66 0.884793
Target:  5'- aAGaCGCGCGGAa-GCUGCGCcCACGc- -3'
miRNA:   3'- -UC-GUGCGCCUaaUGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 120487 0.67 0.840084
Target:  5'- cGGUGCGCGGAguagGUgGCGgGgGCGAGg -3'
miRNA:   3'- -UCGUGCGCCUaa--UGgCGCgCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 120794 0.72 0.582766
Target:  5'- gGGCaACGCgauuGGAUagGCCGCGUGCGCGu- -3'
miRNA:   3'- -UCG-UGCG----CCUAa-UGGCGCGCGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 120974 0.75 0.396518
Target:  5'- cAGCGCGCGGAgcuggaaaagUUACUGCGCGUcaACGu- -3'
miRNA:   3'- -UCGUGCGCCU----------AAUGGCGCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 121817 0.69 0.742227
Target:  5'- gGGCACGUGGAaggcacaGCgGCGaacaaaaGCGCGGGg -3'
miRNA:   3'- -UCGUGCGCCUaa-----UGgCGCg------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 121856 0.69 0.732597
Target:  5'- gGGUugGCGGAggGCCGguCGCGCucGCGc- -3'
miRNA:   3'- -UCGugCGCCUaaUGGC--GCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 122437 0.67 0.818579
Target:  5'- cGGUGCGCGGGggagggacguaggGCCGCGCcCGCGc- -3'
miRNA:   3'- -UCGUGCGCCUaa-----------UGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 122638 0.7 0.643162
Target:  5'- cGC-CGCGGGggGCCGCGaGgGCGGGc -3'
miRNA:   3'- uCGuGCGCCUaaUGGCGCgCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 123030 0.66 0.877856
Target:  5'- -cUAgGCGGAUgcgUGCCGCGCaucGCcaACGAGa -3'
miRNA:   3'- ucGUgCGCCUA---AUGGCGCG---CG--UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 123483 0.74 0.4221
Target:  5'- gGGCAUGCGGug-GCCGCGCGguUGcuGGg -3'
miRNA:   3'- -UCGUGCGCCuaaUGGCGCGCguGC--UC- -5'
24373 3' -57.2 NC_005264.1 + 123774 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.