miRNA display CGI


Results 121 - 140 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 125176 0.66 0.875022
Target:  5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3'
miRNA:   3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 125475 0.66 0.863349
Target:  5'- cGCugGCGGAgaacuccucgGCgGCGCG-GCGAa -3'
miRNA:   3'- uCGugCGCCUaa--------UGgCGCGCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 126092 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 126278 0.67 0.831953
Target:  5'- uGGUcCGCGGAggcggccaUGCCGCuuucggGCGCGCGGc -3'
miRNA:   3'- -UCGuGCGCCUa-------AUGGCG------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 128089 0.68 0.761198
Target:  5'- uAGCGacaGCGGcg-ACCgGCGCGC-CGGGa -3'
miRNA:   3'- -UCGUg--CGCCuaaUGG-CGCGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 128581 1.09 0.002399
Target:  5'- cAGCACGCGGAUUACCGCGCGCACGAGg -3'
miRNA:   3'- -UCGUGCGCCUAAUGGCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 129371 0.66 0.866317
Target:  5'- gAGUGCGCGGGgaaaagACCGUGgCgggaauuaauagucaGCGCGGGg -3'
miRNA:   3'- -UCGUGCGCCUaa----UGGCGC-G---------------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 131609 0.68 0.761198
Target:  5'- cGGCGCGCGug--GgCGCGCGCG-GAGa -3'
miRNA:   3'- -UCGUGCGCcuaaUgGCGCGCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 132221 0.68 0.7888
Target:  5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3'
miRNA:   3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 132323 0.66 0.875734
Target:  5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3'
miRNA:   3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 132448 0.68 0.7888
Target:  5'- cGGCGCGCGacc-GCCGC-CGC-CGAGa -3'
miRNA:   3'- -UCGUGCGCcuaaUGGCGcGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 132913 0.67 0.831953
Target:  5'- aGGCGCaGCGGcgUACCucccuaGCGCcgACGGGg -3'
miRNA:   3'- -UCGUG-CGCCuaAUGGcg----CGCG--UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 133692 0.71 0.622984
Target:  5'- cGC-CGCGGuccUUGCCGcCGCGCACuGGu -3'
miRNA:   3'- uCGuGCGCCu--AAUGGC-GCGCGUGcUC- -5'
24373 3' -57.2 NC_005264.1 + 134987 0.69 0.713091
Target:  5'- cGGCGCauuggGCGGAUgccGCCGCGacagugGCGCGAu -3'
miRNA:   3'- -UCGUG-----CGCCUAa--UGGCGCg-----CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 135602 0.67 0.848032
Target:  5'- uAGagaGCGCaGAagGCCGCGCGCuauuCGAc -3'
miRNA:   3'- -UCg--UGCGcCUaaUGGCGCGCGu---GCUc -5'
24373 3' -57.2 NC_005264.1 + 137396 0.68 0.787898
Target:  5'- gAGUACGCGGuccuaggcacgaaGgccaaucgUAUCGCcugGCGCACGAGa -3'
miRNA:   3'- -UCGUGCGCC-------------Ua-------AUGGCG---CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 138319 0.66 0.877856
Target:  5'- aGGCAaguUGUGGucaUGgCGCGUGCGCGAc -3'
miRNA:   3'- -UCGU---GCGCCua-AUgGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 138489 0.67 0.823645
Target:  5'- cGUACcuGCGGcgGUUGCCGCGCGauuucacuCGCGAa -3'
miRNA:   3'- uCGUG--CGCC--UAAUGGCGCGC--------GUGCUc -5'
24373 3' -57.2 NC_005264.1 + 138542 0.78 0.265272
Target:  5'- cGGCAcCGUGGAUguaACCGCGUGCgGCGGGa -3'
miRNA:   3'- -UCGU-GCGCCUAa--UGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 140546 0.69 0.713091
Target:  5'- aGGCGCGgcugGGAUgGCagaaggGCGCGCGCGGGu -3'
miRNA:   3'- -UCGUGCg---CCUAaUGg-----CGCGCGUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.