miRNA display CGI


Results 141 - 160 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 142029 0.67 0.840084
Target:  5'- cGCGCGauuGGcgUGCaugGCGUGCACGGu -3'
miRNA:   3'- uCGUGCg--CCuaAUGg--CGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 142785 0.68 0.7888
Target:  5'- cGCuACGCGGG--GCCGCGUG-GCGAc -3'
miRNA:   3'- uCG-UGCGCCUaaUGGCGCGCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 144989 0.74 0.457703
Target:  5'- -uCACGCGGucgaACaGCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGCCuaa-UGgCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 145922 0.68 0.761198
Target:  5'- cGGCG-GCGGGUcAgCGCGgGCAUGGGc -3'
miRNA:   3'- -UCGUgCGCCUAaUgGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 149648 0.67 0.823645
Target:  5'- cGGCgGCGaCGGAU--CCGCGCGCagcGCGuAGg -3'
miRNA:   3'- -UCG-UGC-GCCUAauGGCGCGCG---UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 152973 0.66 0.863349
Target:  5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3'
miRNA:   3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5'
24373 3' -57.2 NC_005264.1 + 153092 0.67 0.815168
Target:  5'- gAGCACgGCGGcUUGCCuGC-CGC-CGAGu -3'
miRNA:   3'- -UCGUG-CGCCuAAUGG-CGcGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 154506 0.66 0.870707
Target:  5'- aGGUcUGCGGGgcgcacaUGCCGCGCGCAa--- -3'
miRNA:   3'- -UCGuGCGCCUa------AUGGCGCGCGUgcuc -5'
24373 3' -57.2 NC_005264.1 + 154552 0.69 0.742227
Target:  5'- uGGCACGCGGAUcuccCCG-GCcuGCaACGAGg -3'
miRNA:   3'- -UCGUGCGCCUAau--GGCgCG--CG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 155266 0.66 0.884793
Target:  5'- cAGCgGCGCGGGguagGCgGCGgGgACGAu -3'
miRNA:   3'- -UCG-UGCGCCUaa--UGgCGCgCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 155931 0.73 0.523587
Target:  5'- cGCGCccaCGGAaaGCCGCGCGCugGGa -3'
miRNA:   3'- uCGUGc--GCCUaaUGGCGCGCGugCUc -5'
24373 3' -57.2 NC_005264.1 + 156116 0.68 0.770522
Target:  5'- cGC-CGCGGAgUACCGCGaCGCuAgGAc -3'
miRNA:   3'- uCGuGCGCCUaAUGGCGC-GCG-UgCUc -5'
24373 3' -57.2 NC_005264.1 + 156432 0.67 0.818579
Target:  5'- uGUACGUGGAggaguucggcaugGCCGUGgagcaGCACGAGc -3'
miRNA:   3'- uCGUGCGCCUaa-----------UGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 156610 0.66 0.884793
Target:  5'- cGGCAagucuCGCGGcg-GCCGCG-GCGgGGGg -3'
miRNA:   3'- -UCGU-----GCGCCuaaUGGCGCgCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 156903 0.67 0.848032
Target:  5'- cGC-CGCGGGUUcggGCCGUgguuagauaGCGCcucGCGAGu -3'
miRNA:   3'- uCGuGCGCCUAA---UGGCG---------CGCG---UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 157185 0.66 0.884793
Target:  5'- cAGCAUGCGugcGAcUACCGCcGCGCuguGGGg -3'
miRNA:   3'- -UCGUGCGC---CUaAUGGCG-CGCGug-CUC- -5'
24373 3' -57.2 NC_005264.1 + 157356 0.66 0.863349
Target:  5'- gGGUugGCGGGcccugGCCGUGaUGCugGGc -3'
miRNA:   3'- -UCGugCGCCUaa---UGGCGC-GCGugCUc -5'
24373 3' -57.2 NC_005264.1 + 157619 0.71 0.599816
Target:  5'- aGGC-CGCGGAagaagagcuucgccUcGCCGCG-GCGCGAGa -3'
miRNA:   3'- -UCGuGCGCCU--------------AaUGGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 158334 0.68 0.7888
Target:  5'- uGGCACGCGGAacacaagcgGCCGCacCGCGCc-- -3'
miRNA:   3'- -UCGUGCGCCUaa-------UGGCGc-GCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 159371 0.66 0.891512
Target:  5'- uGCcacauCGUGGAUgcggcACCGgGCGcCACGGGc -3'
miRNA:   3'- uCGu----GCGCCUAa----UGGCgCGC-GUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.