miRNA display CGI


Results 61 - 80 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 109832 0.67 0.815168
Target:  5'- cAGguUGCGGAggcagaggauuUUGcCCGCGaGCGCGAGc -3'
miRNA:   3'- -UCguGCGCCU-----------AAU-GGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 108607 0.66 0.891512
Target:  5'- uGGCGCGCGGG--GCCGCcuCGaCACa-- -3'
miRNA:   3'- -UCGUGCGCCUaaUGGCGc-GC-GUGcuc -5'
24373 3' -57.2 NC_005264.1 + 108467 0.71 0.612901
Target:  5'- cGCGCGgGGAUccggugGCCGCGCGaCGCu-- -3'
miRNA:   3'- uCGUGCgCCUAa-----UGGCGCGC-GUGcuc -5'
24373 3' -57.2 NC_005264.1 + 107220 0.71 0.612901
Target:  5'- gGGUACGCGGA--GCgGUGCGCAaGAa -3'
miRNA:   3'- -UCGUGCGCCUaaUGgCGCGCGUgCUc -5'
24373 3' -57.2 NC_005264.1 + 104846 0.68 0.797738
Target:  5'- gGGC-CGCuGAgccacgGCCGC-CGCGCGGGg -3'
miRNA:   3'- -UCGuGCGcCUaa----UGGCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 104611 0.67 0.840887
Target:  5'- cGCGCaCGGGcaaaacauaucccaACCaGCGCGCGCGGGg -3'
miRNA:   3'- uCGUGcGCCUaa------------UGG-CGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 102199 0.66 0.863349
Target:  5'- gAGCAgGCGGGgaucaaGCUGCuGCuccuGCGCGAGc -3'
miRNA:   3'- -UCGUgCGCCUaa----UGGCG-CG----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 101652 0.67 0.83113
Target:  5'- aGGCGCGagucaaGGAUuuucuaucgucauUGCUGCGCgaGCGCGAa -3'
miRNA:   3'- -UCGUGCg-----CCUA-------------AUGGCGCG--CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 99587 0.66 0.877856
Target:  5'- aAGCGCaGCGGcaUGCUGgGCGCuuCGAu -3'
miRNA:   3'- -UCGUG-CGCCuaAUGGCgCGCGu-GCUc -5'
24373 3' -57.2 NC_005264.1 + 97190 0.68 0.797738
Target:  5'- gGGCAgGUcucGGuauugGUUACCgguGCGCGCGCGGGu -3'
miRNA:   3'- -UCGUgCG---CC-----UAAUGG---CGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 96333 0.73 0.523587
Target:  5'- gGGCACGCucgcugUACCGCGCcaucgccgGCACGGGa -3'
miRNA:   3'- -UCGUGCGccua--AUGGCGCG--------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 95440 0.66 0.887507
Target:  5'- aAGCcguCGUGGAauacgcUACCGCGCcggcgggcgcagcgaGCGCGGGc -3'
miRNA:   3'- -UCGu--GCGCCUa-----AUGGCGCG---------------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 92415 0.7 0.692323
Target:  5'- aGGCACGCGGGgaACCugaacgaGC-CGCACGGu -3'
miRNA:   3'- -UCGUGCGCCUaaUGG-------CGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 90651 0.67 0.831953
Target:  5'- gGGCGCGCGGAg-ACCGCauUGCugGcGg -3'
miRNA:   3'- -UCGUGCGCCUaaUGGCGc-GCGugCuC- -5'
24373 3' -57.2 NC_005264.1 + 88701 0.68 0.797738
Target:  5'- cAGCuGCGUGGcgUGCaUGC-CGCAUGAGg -3'
miRNA:   3'- -UCG-UGCGCCuaAUG-GCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 87747 0.66 0.891512
Target:  5'- cGGCGC-CGGcgccUGCCGCaGCGcCGCGAa -3'
miRNA:   3'- -UCGUGcGCCua--AUGGCG-CGC-GUGCUc -5'
24373 3' -57.2 NC_005264.1 + 87603 0.66 0.877856
Target:  5'- cGGCaaACGCGGAcgaccugGCCGCGC-CA-GAGg -3'
miRNA:   3'- -UCG--UGCGCCUaa-----UGGCGCGcGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 87528 0.68 0.797738
Target:  5'- uGGCGCGCGGcagaUGCUGCaGCGUggGCGuAGa -3'
miRNA:   3'- -UCGUGCGCCua--AUGGCG-CGCG--UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 86703 0.72 0.533309
Target:  5'- cGCGCGCGGucuUUGCCGCcguccGCGUACa-- -3'
miRNA:   3'- uCGUGCGCCu--AAUGGCG-----CGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 85830 0.67 0.847245
Target:  5'- aAGCGCGCGcucagUACCgggucuuGCGCGCACu-- -3'
miRNA:   3'- -UCGUGCGCcua--AUGG-------CGCGCGUGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.