Results 101 - 120 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 37583 | 0.66 | 0.884793 |
Target: 5'- cGGCAagucuCGCGGcg-GCCGCG-GCGgGGGg -3' miRNA: 3'- -UCGU-----GCGCCuaaUGGCGCgCGUgCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 66182 | 0.66 | 0.884793 |
Target: 5'- gGGUGCGCuaac-GCCGCGCGCgACGGu -3' miRNA: 3'- -UCGUGCGccuaaUGGCGCGCG-UGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 120303 | 0.66 | 0.884793 |
Target: 5'- aAGaCGCGCGGAa-GCUGCGCcCACGc- -3' miRNA: 3'- -UC-GUGCGCCUaaUGGCGCGcGUGCuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 38158 | 0.66 | 0.884793 |
Target: 5'- cAGCAUGCGugcGAcUACCGCcGCGCuguGGGg -3' miRNA: 3'- -UCGUGCGC---CUaAUGGCG-CGCGug-CUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 155266 | 0.66 | 0.884793 |
Target: 5'- cAGCgGCGCGGGguagGCgGCGgGgACGAu -3' miRNA: 3'- -UCG-UGCGCCUaa--UGgCGCgCgUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 95440 | 0.66 | 0.887507 |
Target: 5'- aAGCcguCGUGGAauacgcUACCGCGCcggcgggcgcagcgaGCGCGGGc -3' miRNA: 3'- -UCGu--GCGCCUa-----AUGGCGCG---------------CGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 159371 | 0.66 | 0.891512 |
Target: 5'- uGCcacauCGUGGAUgcggcACCGgGCGcCACGGGc -3' miRNA: 3'- uCGu----GCGCCUAa----UGGCgCGC-GUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 47309 | 0.66 | 0.877856 |
Target: 5'- uGGCA-GCGGGgaACUGCcCGCGuCGAGg -3' miRNA: 3'- -UCGUgCGCCUaaUGGCGcGCGU-GCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 13296 | 0.66 | 0.875734 |
Target: 5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3' miRNA: 3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 6149 | 0.66 | 0.875022 |
Target: 5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3' miRNA: 3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 156903 | 0.67 | 0.848032 |
Target: 5'- cGC-CGCGGGUUcggGCCGUgguuagauaGCGCcucGCGAGu -3' miRNA: 3'- uCGuGCGCCUAA---UGGCG---------CGCG---UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 162822 | 0.66 | 0.855789 |
Target: 5'- gGGC-CGCGGcGUUAUgGCGUGCcgguGCGAa -3' miRNA: 3'- -UCGuGCGCC-UAAUGgCGCGCG----UGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 38329 | 0.66 | 0.863349 |
Target: 5'- gGGUugGCGGGcccugGCCGUGaUGCugGGc -3' miRNA: 3'- -UCGugCGCCUaa---UGGCGC-GCGugCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 6448 | 0.66 | 0.863349 |
Target: 5'- cGCugGCGGAgaacuccucgGCgGCGCG-GCGAa -3' miRNA: 3'- uCGugCGCCUaa--------UGgCGCGCgUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 33946 | 0.66 | 0.863349 |
Target: 5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3' miRNA: 3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 102199 | 0.66 | 0.863349 |
Target: 5'- gAGCAgGCGGGgaucaaGCUGCuGCuccuGCGCGAGc -3' miRNA: 3'- -UCGUgCGCCUaa----UGGCG-CG----CGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 129371 | 0.66 | 0.866317 |
Target: 5'- gAGUGCGCGGGgaaaagACCGUGgCgggaauuaauagucaGCGCGGGg -3' miRNA: 3'- -UCGUGCGCCUaa----UGGCGC-G---------------CGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 7065 | 0.66 | 0.870707 |
Target: 5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3' miRNA: 3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 77313 | 0.66 | 0.870707 |
Target: 5'- cAGguCGCGGGcgaguugguucaUUGCCcuCGCGCGgGAGa -3' miRNA: 3'- -UCguGCGCCU------------AAUGGc-GCGCGUgCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 154506 | 0.66 | 0.870707 |
Target: 5'- aGGUcUGCGGGgcgcacaUGCCGCGCGCAa--- -3' miRNA: 3'- -UCGuGCGCCUa------AUGGCGCGCGUgcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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