miRNA display CGI


Results 61 - 80 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 138489 0.67 0.823645
Target:  5'- cGUACcuGCGGcgGUUGCCGCGCGauuucacuCGCGAa -3'
miRNA:   3'- uCGUG--CGCC--UAAUGGCGCGC--------GUGCUc -5'
24373 3' -57.2 NC_005264.1 + 17881 0.67 0.823645
Target:  5'- cGGCGgGCuGAUcUACgGCGCGCACa-- -3'
miRNA:   3'- -UCGUgCGcCUA-AUGgCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 7065 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 33946 0.66 0.863349
Target:  5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3'
miRNA:   3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5'
24373 3' -57.2 NC_005264.1 + 156903 0.67 0.848032
Target:  5'- cGC-CGCGGGUUcggGCCGUgguuagauaGCGCcucGCGAGu -3'
miRNA:   3'- uCGuGCGCCUAA---UGGCG---------CGCG---UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 746 0.67 0.848032
Target:  5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 120487 0.67 0.840084
Target:  5'- cGGUGCGCGGAguagGUgGCGgGgGCGAGg -3'
miRNA:   3'- -UCGUGCGCCUaa--UGgCGCgCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 132913 0.67 0.831953
Target:  5'- aGGCGCaGCGGcgUACCucccuaGCGCcgACGGGg -3'
miRNA:   3'- -UCGUG-CGCCuaAUGGcg----CGCG--UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 55619 0.67 0.831953
Target:  5'- cGGCugGCGccgaAUgccaACCGCGCGCGCc-- -3'
miRNA:   3'- -UCGugCGCc---UAa---UGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 126278 0.67 0.831953
Target:  5'- uGGUcCGCGGAggcggccaUGCCGCuuucggGCGCGCGGc -3'
miRNA:   3'- -UCGuGCGCCUa-------AUGGCG------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 108467 0.71 0.612901
Target:  5'- cGCGCGgGGAUccggugGCCGCGCGaCGCu-- -3'
miRNA:   3'- uCGUGCgCCUAa-----UGGCGCGC-GUGcuc -5'
24373 3' -57.2 NC_005264.1 + 52847 0.69 0.703234
Target:  5'- uGCuACGCGGGa-GCUGCGCGCauACGAc -3'
miRNA:   3'- uCG-UGCGCCUaaUGGCGCGCG--UGCUc -5'
24373 3' -57.2 NC_005264.1 + 3410 0.67 0.818579
Target:  5'- cGGUGCGCGGGggagggacguaggGCCGCGCcCGCGc- -3'
miRNA:   3'- -UCGUGCGCCUaa-----------UGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 45741 0.68 0.80653
Target:  5'- cAGCGCGCGGucgUGCCGUaucuaGCACa-- -3'
miRNA:   3'- -UCGUGCGCCua-AUGGCGcg---CGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 13194 0.68 0.7888
Target:  5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3'
miRNA:   3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 137396 0.68 0.787898
Target:  5'- gAGUACGCGGuccuaggcacgaaGgccaaucgUAUCGCcugGCGCACGAGa -3'
miRNA:   3'- -UCGUGCGCC-------------Ua-------AUGGCG---CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 156116 0.68 0.770522
Target:  5'- cGC-CGCGGAgUACCGCGaCGCuAgGAc -3'
miRNA:   3'- uCGuGCGCCUaAUGGCGC-GCG-UgCUc -5'
24373 3' -57.2 NC_005264.1 + 4748 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 17286 0.69 0.732597
Target:  5'- gGGCAaacaugGUGGccacgGUUACCGCuaGCGCGAGa -3'
miRNA:   3'- -UCGUg-----CGCC-----UAAUGGCGcgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 134987 0.69 0.713091
Target:  5'- cGGCGCauuggGCGGAUgccGCCGCGacagugGCGCGAu -3'
miRNA:   3'- -UCGUG-----CGCCUAa--UGGCGCg-----CGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.