miRNA display CGI


Results 81 - 100 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 44268 0.69 0.751764
Target:  5'- cGGCGCGUcac--GCCGCGCGgAUGAGa -3'
miRNA:   3'- -UCGUGCGccuaaUGGCGCGCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 121817 0.69 0.742227
Target:  5'- gGGCACGUGGAaggcacaGCgGCGaacaaaaGCGCGGGg -3'
miRNA:   3'- -UCGUGCGCCUaa-----UGgCGCg------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 17286 0.69 0.732597
Target:  5'- gGGCAaacaugGUGGccacgGUUACCGCuaGCGCGAGa -3'
miRNA:   3'- -UCGUg-----CGCC-----UAAUGGCGcgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 2830 0.69 0.732597
Target:  5'- gGGUugGCGGAggGCCGguCGCGCucGCGc- -3'
miRNA:   3'- -UCGugCGCCUaaUGGC--GCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 46783 0.69 0.703234
Target:  5'- gGGCGCGU----UACUGCGCcccGCACGAGg -3'
miRNA:   3'- -UCGUGCGccuaAUGGCGCG---CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 109832 0.67 0.815168
Target:  5'- cAGguUGCGGAggcagaggauuUUGcCCGCGaGCGCGAGc -3'
miRNA:   3'- -UCguGCGCCU-----------AAU-GGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 30621 0.67 0.823645
Target:  5'- cGGCgGCGaCGGAU--CCGCGCGCagcGCGuAGg -3'
miRNA:   3'- -UCG-UGC-GCCUAauGGCGCGCG---UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 81067 0.68 0.797738
Target:  5'- aAGCAgaCGGuaUGCUGCGCGCACGu- -3'
miRNA:   3'- -UCGUgcGCCuaAUGGCGCGCGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 82369 0.68 0.7888
Target:  5'- aGGCGCGUcGAUccggUGCCGgGCGCAgGGc -3'
miRNA:   3'- -UCGUGCGcCUA----AUGGCgCGCGUgCUc -5'
24373 3' -57.2 NC_005264.1 + 101652 0.67 0.83113
Target:  5'- aGGCGCGagucaaGGAUuuucuaucgucauUGCUGCGCgaGCGCGAa -3'
miRNA:   3'- -UCGUGCg-----CCUA-------------AUGGCGCG--CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 13194 0.68 0.7888
Target:  5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3'
miRNA:   3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 66541 0.77 0.291071
Target:  5'- cAGCaACGCGGAc-GCCGagGCGCACGAGc -3'
miRNA:   3'- -UCG-UGCGCCUaaUGGCg-CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 37405 0.67 0.818579
Target:  5'- uGUACGUGGAggaguucggcaugGCCGUGgagcaGCACGAGc -3'
miRNA:   3'- uCGUGCGCCUaa-----------UGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 68981 0.68 0.761198
Target:  5'- cGGCACGacuacccgcCGcAUUAUUGCGCGCACGGc -3'
miRNA:   3'- -UCGUGC---------GCcUAAUGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 123774 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 132323 0.66 0.875734
Target:  5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3'
miRNA:   3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 126092 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 3689 0.66 0.873592
Target:  5'- gGGCcugGCGCGGAaagggcgcacaguacUUGCCGCGgGCGgGc- -3'
miRNA:   3'- -UCG---UGCGCCU---------------AAUGGCGCgCGUgCuc -5'
24373 3' -57.2 NC_005264.1 + 18074 0.66 0.873592
Target:  5'- gGGCGCGCGGGcaUuuaauucugcuguuaUGCCG-GCagaugGCGCGAGa -3'
miRNA:   3'- -UCGUGCGCCU--A---------------AUGGCgCG-----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 133692 0.71 0.622984
Target:  5'- cGC-CGCGGuccUUGCCGcCGCGCACuGGu -3'
miRNA:   3'- uCGuGCGCCu--AAUGGC-GCGCGUGcUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.