miRNA display CGI


Results 101 - 120 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 132323 0.66 0.875734
Target:  5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3'
miRNA:   3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 125176 0.66 0.875022
Target:  5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3'
miRNA:   3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 66873 0.66 0.870707
Target:  5'- cGCGCGCGGAgagcaGCCGCGa-CACc-- -3'
miRNA:   3'- uCGUGCGCCUaa---UGGCGCgcGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 3689 0.66 0.873592
Target:  5'- gGGCcugGCGCGGAaagggcgcacaguacUUGCCGCGgGCGgGc- -3'
miRNA:   3'- -UCG---UGCGCCU---------------AAUGGCGCgCGUgCuc -5'
24373 3' -57.2 NC_005264.1 + 126092 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 41389 0.66 0.855789
Target:  5'- uGUACGCGuag-GCCGCGCGCugugucuCGGa -3'
miRNA:   3'- uCGUGCGCcuaaUGGCGCGCGu------GCUc -5'
24373 3' -57.2 NC_005264.1 + 20268 0.67 0.848032
Target:  5'- cGGCcuCGCGGAggggACCGUcuGCGCGCu-- -3'
miRNA:   3'- -UCGu-GCGCCUaa--UGGCG--CGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 68981 0.68 0.761198
Target:  5'- cGGCACGacuacccgcCGcAUUAUUGCGCGCACGGc -3'
miRNA:   3'- -UCGUGC---------GCcUAAUGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 123774 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 84328 0.68 0.761198
Target:  5'- cGGCGCGauGGUUacuggccucACCGCGUGCACcGGc -3'
miRNA:   3'- -UCGUGCgcCUAA---------UGGCGCGCGUGcUC- -5'
24373 3' -57.2 NC_005264.1 + 145922 0.68 0.761198
Target:  5'- cGGCG-GCGGGUcAgCGCGgGCAUGGGc -3'
miRNA:   3'- -UCGUgCGCCUAaUgGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 8317 0.69 0.751764
Target:  5'- cGGCACGCuuGUUugCGCGCgGCAUGuGc -3'
miRNA:   3'- -UCGUGCGccUAAugGCGCG-CGUGCuC- -5'
24373 3' -57.2 NC_005264.1 + 121856 0.69 0.732597
Target:  5'- gGGUugGCGGAggGCCGguCGCGCucGCGc- -3'
miRNA:   3'- -UCGugCGCCUaaUGGC--GCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 5997 0.69 0.722882
Target:  5'- cAGCGCgGCGGuc-GCUGUGCGCACc-- -3'
miRNA:   3'- -UCGUG-CGCCuaaUGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 35985 0.69 0.722882
Target:  5'- gGGgGCGCGGAgagcgaaaCGCGCaGCgACGAGg -3'
miRNA:   3'- -UCgUGCGCCUaaug----GCGCG-CG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 18074 0.66 0.873592
Target:  5'- gGGCGCGCGGGcaUuuaauucugcuguuaUGCCG-GCagaugGCGCGAGa -3'
miRNA:   3'- -UCGUGCGCCU--A---------------AUGGCgCG-----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 68025 0.67 0.840084
Target:  5'- gAGCGCcaaagaGCGGAUaACCGCuuccGUGCccgACGAGg -3'
miRNA:   3'- -UCGUG------CGCCUAaUGGCG----CGCG---UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 142029 0.67 0.840084
Target:  5'- cGCGCGauuGGcgUGCaugGCGUGCACGGu -3'
miRNA:   3'- uCGUGCg--CCuaAUGg--CGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 84449 0.67 0.848032
Target:  5'- aAGC-UGUuccaGAUUGCCGCGUGCAuCGGGu -3'
miRNA:   3'- -UCGuGCGc---CUAAUGGCGCGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 119772 0.67 0.848032
Target:  5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.