miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 132323 0.66 0.875734
Target:  5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3'
miRNA:   3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 125176 0.66 0.875022
Target:  5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3'
miRNA:   3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 6149 0.66 0.875022
Target:  5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3'
miRNA:   3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 3689 0.66 0.873592
Target:  5'- gGGCcugGCGCGGAaagggcgcacaguacUUGCCGCGgGCGgGc- -3'
miRNA:   3'- -UCG---UGCGCCU---------------AAUGGCGCgCGUgCuc -5'
24373 3' -57.2 NC_005264.1 + 18074 0.66 0.873592
Target:  5'- gGGCGCGCGGGcaUuuaauucugcuguuaUGCCG-GCagaugGCGCGAGa -3'
miRNA:   3'- -UCGUGCGCCU--A---------------AUGGCgCG-----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 126092 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 77313 0.66 0.870707
Target:  5'- cAGguCGCGGGcgaguugguucaUUGCCcuCGCGCGgGAGa -3'
miRNA:   3'- -UCguGCGCCU------------AAUGGc-GCGCGUgCUC- -5'
24373 3' -57.2 NC_005264.1 + 66873 0.66 0.870707
Target:  5'- cGCGCGCGGAgagcaGCCGCGa-CACc-- -3'
miRNA:   3'- uCGUGCGCCUaa---UGGCGCgcGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 154506 0.66 0.870707
Target:  5'- aGGUcUGCGGGgcgcacaUGCCGCGCGCAa--- -3'
miRNA:   3'- -UCGuGCGCCUa------AUGGCGCGCGUgcuc -5'
24373 3' -57.2 NC_005264.1 + 7065 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 129371 0.66 0.866317
Target:  5'- gAGUGCGCGGGgaaaagACCGUGgCgggaauuaauagucaGCGCGGGg -3'
miRNA:   3'- -UCGUGCGCCUaa----UGGCGC-G---------------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 102199 0.66 0.863349
Target:  5'- gAGCAgGCGGGgaucaaGCUGCuGCuccuGCGCGAGc -3'
miRNA:   3'- -UCGUgCGCCUaa----UGGCG-CG----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 33946 0.66 0.863349
Target:  5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3'
miRNA:   3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5'
24373 3' -57.2 NC_005264.1 + 38329 0.66 0.863349
Target:  5'- gGGUugGCGGGcccugGCCGUGaUGCugGGc -3'
miRNA:   3'- -UCGugCGCCUaa---UGGCGC-GCGugCUc -5'
24373 3' -57.2 NC_005264.1 + 6448 0.66 0.863349
Target:  5'- cGCugGCGGAgaacuccucgGCgGCGCG-GCGAa -3'
miRNA:   3'- uCGugCGCCUaa--------UGgCGCGCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 157356 0.66 0.863349
Target:  5'- gGGUugGCGGGcccugGCCGUGaUGCugGGc -3'
miRNA:   3'- -UCGugCGCCUaa---UGGCGC-GCGugCUc -5'
24373 3' -57.2 NC_005264.1 + 125475 0.66 0.863349
Target:  5'- cGCugGCGGAgaacuccucgGCgGCGCG-GCGAa -3'
miRNA:   3'- uCGugCGCCUaa--------UGgCGCGCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 152973 0.66 0.863349
Target:  5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3'
miRNA:   3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5'
24373 3' -57.2 NC_005264.1 + 41389 0.66 0.855789
Target:  5'- uGUACGCGuag-GCCGCGCGCugugucuCGGa -3'
miRNA:   3'- uCGUGCGCcuaaUGGCGCGCGu------GCUc -5'
24373 3' -57.2 NC_005264.1 + 54338 0.66 0.855789
Target:  5'- aAGCGCGCGGcgUuuauggcgaGCCuuagaaGCGuCGCGCGGc -3'
miRNA:   3'- -UCGUGCGCCuaA---------UGG------CGC-GCGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.