miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 5' -58.4 NC_005264.1 + 124109 0.66 0.770826
Target:  5'- cAGCCCGUCCGgggagGGGuccucUACGCCu- -3'
miRNA:   3'- -UUGGGCAGGCagaa-CCCu----GUGCGGuu -5'
24373 5' -58.4 NC_005264.1 + 5082 0.66 0.770826
Target:  5'- cAGCCCGUCCGgggagGGGuccucUACGCCu- -3'
miRNA:   3'- -UUGGGCAGGCagaa-CCCu----GUGCGGuu -5'
24373 5' -58.4 NC_005264.1 + 45120 0.67 0.758594
Target:  5'- cACUCGUCCG-CgUGGGGCgaagaaccagacagGCGCCAc -3'
miRNA:   3'- uUGGGCAGGCaGaACCCUG--------------UGCGGUu -5'
24373 5' -58.4 NC_005264.1 + 131263 0.67 0.742318
Target:  5'- uGCCCG-CCGUaaCUgcgcgGGGuaACGCGCCAGa -3'
miRNA:   3'- uUGGGCaGGCA--GAa----CCC--UGUGCGGUU- -5'
24373 5' -58.4 NC_005264.1 + 81659 0.67 0.732614
Target:  5'- gGGgCUGUUCGUCUUGGGGucguucCugGCCGu -3'
miRNA:   3'- -UUgGGCAGGCAGAACCCU------GugCGGUu -5'
24373 5' -58.4 NC_005264.1 + 57148 0.68 0.662775
Target:  5'- aGGCUgGUCUGUCUUugcgccggcGGGAgACGCCGu -3'
miRNA:   3'- -UUGGgCAGGCAGAA---------CCCUgUGCGGUu -5'
24373 5' -58.4 NC_005264.1 + 51464 0.69 0.652632
Target:  5'- cACCCugaaGUCgUGGGACACGCCGc -3'
miRNA:   3'- uUGGGcaggCAGaACCCUGUGCGGUu -5'
24373 5' -58.4 NC_005264.1 + 125180 0.72 0.453908
Target:  5'- cGCCCGUCgCGcaUCgcgugcacgaugUGGGGCACGCCGGu -3'
miRNA:   3'- uUGGGCAG-GC--AGa-----------ACCCUGUGCGGUU- -5'
24373 5' -58.4 NC_005264.1 + 6153 0.72 0.453908
Target:  5'- cGCCCGUCgCGcaUCgcgugcacgaugUGGGGCACGCCGGu -3'
miRNA:   3'- uUGGGCAG-GC--AGa-----------ACCCUGUGCGGUU- -5'
24373 5' -58.4 NC_005264.1 + 128616 1.04 0.003651
Target:  5'- aAACCCGUCCGUCUUGGGACACGCCAAg -3'
miRNA:   3'- -UUGGGCAGGCAGAACCCUGUGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.