miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 37202 0.66 0.714304
Target:  5'- cGGCGCCGCUCCauggacUCCCGaCCGGc- -3'
miRNA:   3'- -CUGUGGCGGGGggua--AGGGC-GGCUug -5'
24374 3' -60.6 NC_005264.1 + 159448 0.66 0.704644
Target:  5'- cGCACCGaCCCCgCGUUCCggagaagcccuCGCCGcccccaGACg -3'
miRNA:   3'- cUGUGGC-GGGGgGUAAGG-----------GCGGC------UUG- -5'
24374 3' -60.6 NC_005264.1 + 149220 0.66 0.704644
Target:  5'- -uUACCGCCgCCCCug-CCCGCguccCGAccGCg -3'
miRNA:   3'- cuGUGGCGG-GGGGuaaGGGCG----GCU--UG- -5'
24374 3' -60.6 NC_005264.1 + 30193 0.66 0.704644
Target:  5'- -uUACCGCCgCCCCug-CCCGCguccCGAccGCg -3'
miRNA:   3'- cuGUGGCGG-GGGGuaaGGGCG----GCU--UG- -5'
24374 3' -60.6 NC_005264.1 + 40421 0.66 0.704644
Target:  5'- cGCACCGaCCCCgCGUUCCggagaagcccuCGCCGcccccaGACg -3'
miRNA:   3'- cUGUGGC-GGGGgGUAAGG-----------GCGGC------UUG- -5'
24374 3' -60.6 NC_005264.1 + 6697 0.66 0.694928
Target:  5'- aGACgGCCGCCucgCCCUcgUCCUGCCcaccaccuuGGGCg -3'
miRNA:   3'- -CUG-UGGCGG---GGGGuaAGGGCGG---------CUUG- -5'
24374 3' -60.6 NC_005264.1 + 123753 0.66 0.694928
Target:  5'- aGACGCCGCUg------CCCGCCGAGCc -3'
miRNA:   3'- -CUGUGGCGGgggguaaGGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 120981 0.66 0.694928
Target:  5'- -cCGuuGCCCCCC---CCC-CCGAGCu -3'
miRNA:   3'- cuGUggCGGGGGGuaaGGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 1955 0.66 0.694928
Target:  5'- -cCGuuGCCCCCC---CCC-CCGAGCu -3'
miRNA:   3'- cuGUggCGGGGGGuaaGGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 96143 0.67 0.685162
Target:  5'- cGACACguaguaCGCCCCCCg--CCCggcGCCGGu- -3'
miRNA:   3'- -CUGUG------GCGGGGGGuaaGGG---CGGCUug -5'
24374 3' -60.6 NC_005264.1 + 16056 0.67 0.685162
Target:  5'- cACACCGCCgCaCCGagaaCCGCCGcGCg -3'
miRNA:   3'- cUGUGGCGGgG-GGUaag-GGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 59030 0.67 0.675355
Target:  5'- aGCGCaaGCCCCgCggUCCCGCCGc-- -3'
miRNA:   3'- cUGUGg-CGGGGgGuaAGGGCGGCuug -5'
24374 3' -60.6 NC_005264.1 + 114122 0.67 0.675355
Target:  5'- aGCAUCGCCggccgCCUCAUcUCCCG-CGAGCg -3'
miRNA:   3'- cUGUGGCGG-----GGGGUA-AGGGCgGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 140183 0.67 0.675355
Target:  5'- cGACgACCGCCCCCaaaagcacuugcUAUaCCUGgCGAGCc -3'
miRNA:   3'- -CUG-UGGCGGGGG------------GUAaGGGCgGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 131824 0.67 0.665516
Target:  5'- cGGCACCGUCgCCCAgagagaugaucUCCCGCgaaacaGAGCc -3'
miRNA:   3'- -CUGUGGCGGgGGGUa----------AGGGCGg-----CUUG- -5'
24374 3' -60.6 NC_005264.1 + 46295 0.67 0.665516
Target:  5'- cGACGCCGCcuccguagCCCCCAacgacCCCaCCGAAg -3'
miRNA:   3'- -CUGUGGCG--------GGGGGUaa---GGGcGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 12798 0.67 0.665516
Target:  5'- cGGCACCGUCgCCCAgagagaugaucUCCCGCgaaacaGAGCc -3'
miRNA:   3'- -CUGUGGCGGgGGGUa----------AGGGCGg-----CUUG- -5'
24374 3' -60.6 NC_005264.1 + 4697 0.67 0.659599
Target:  5'- uGGCGCCGCgUCCacgacagcagcugguCCAgacgccgcugCCCGCCGAGCc -3'
miRNA:   3'- -CUGUGGCG-GGG---------------GGUaa--------GGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 82559 0.67 0.645768
Target:  5'- --gGCCGCCUCUUuaaUCuCCGCUGAGCg -3'
miRNA:   3'- cugUGGCGGGGGGua-AG-GGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 125746 0.67 0.645768
Target:  5'- gGGCGCCGUCCCCgGaacUgCCGCCGc-- -3'
miRNA:   3'- -CUGUGGCGGGGGgUa--AgGGCGGCuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.