Results 41 - 43 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24374 | 5' | -55.4 | NC_005264.1 | + | 121913 | 0.66 | 0.926697 |
Target: 5'- gGGGCGCgGCGCGGcgGGgaggGCGacGGCGAg -3' miRNA: 3'- -UUCGCG-CGCGUUuaUCa---CGCc-CUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 50818 | 0.66 | 0.926697 |
Target: 5'- -cGCGCGCGCAGGUu-UGCGuguaGACGu -3' miRNA: 3'- uuCGCGCGCGUUUAucACGCc---CUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 2887 | 0.66 | 0.926697 |
Target: 5'- gGGGCGCgGCGCGGcgGGgaggGCGacGGCGAg -3' miRNA: 3'- -UUCGCG-CGCGUUuaUCa---CGCc-CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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