Results 41 - 43 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24374 | 5' | -55.4 | NC_005264.1 | + | 153381 | 0.7 | 0.704255 |
Target: 5'- gAAGCGuUGCGCGAggggaaaccgcuaAUGGUGCaGGACGu -3' miRNA: 3'- -UUCGC-GCGCGUU-------------UAUCACGcCCUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 154928 | 0.7 | 0.74522 |
Target: 5'- -cGCGCGCGUugcuagccAGAgcGUGgGGGACGu -3' miRNA: 3'- uuCGCGCGCG--------UUUauCACgCCCUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 155266 | 0.7 | 0.74522 |
Target: 5'- cAGCG-GCGCgGGGUAGgcgGCGgGGACGAu -3' miRNA: 3'- uUCGCgCGCG-UUUAUCa--CGC-CCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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