miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 121967 0.66 0.944194
Target:  5'- uGCUGUUGUUuaGCGCGcAAGCGGGUUUc -3'
miRNA:   3'- gCGGUAGCAGc-CGCGC-UUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 117500 0.68 0.851547
Target:  5'- uCGCC-UCGUCucgGGCGCGgcGCGucugcGGUCg -3'
miRNA:   3'- -GCGGuAGCAG---CCGCGCuuUGU-----CCAGa -5'
24375 3' -55.6 NC_005264.1 + 116380 0.67 0.915054
Target:  5'- uGCCGucgcgggagaccucuUCGUCGGCucucgcugagcccGCG--GCAGGUCg -3'
miRNA:   3'- gCGGU---------------AGCAGCCG-------------CGCuuUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 113365 0.66 0.929808
Target:  5'- uGcCCGUCGaauaCGGCGCGGGucaGGGUUa -3'
miRNA:   3'- gC-GGUAGCa---GCCGCGCUUug-UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 111725 0.66 0.939632
Target:  5'- cCGCCAgCGUCgaGGCGCG-AGCAGa--- -3'
miRNA:   3'- -GCGGUaGCAG--CCGCGCuUUGUCcaga -5'
24375 3' -55.6 NC_005264.1 + 96351 0.69 0.835531
Target:  5'- gCGCCAUCGcCGGCaCGGGACucaaaAGGaUCa -3'
miRNA:   3'- -GCGGUAGCaGCCGcGCUUUG-----UCC-AGa -5'
24375 3' -55.6 NC_005264.1 + 93251 0.83 0.18447
Target:  5'- gCGCCcUCGUCGGCGCGuucgcgcaaccuGAAUAGGUCg -3'
miRNA:   3'- -GCGGuAGCAGCCGCGC------------UUUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 83395 0.78 0.349269
Target:  5'- cCGCuCGUCGUCuGCGCGccGCGGGUCg -3'
miRNA:   3'- -GCG-GUAGCAGcCGCGCuuUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 81855 0.71 0.725419
Target:  5'- gGCCA-CGUCGGCGUcgaggaaGAAAUuGGUCg -3'
miRNA:   3'- gCGGUaGCAGCCGCG-------CUUUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 75809 0.69 0.801377
Target:  5'- uCGCCGUcCGUaGGCGCGc-GguGGUCUa -3'
miRNA:   3'- -GCGGUA-GCAgCCGCGCuuUguCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 75696 0.73 0.605697
Target:  5'- gCGCCGUCuuUCGGCGCGaAGACuGGUg- -3'
miRNA:   3'- -GCGGUAGc-AGCCGCGC-UUUGuCCAga -5'
24375 3' -55.6 NC_005264.1 + 75399 0.67 0.901141
Target:  5'- gCGCCAcCGUCuGCGCGGccGCGGG-Ca -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUu-UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 75263 0.71 0.696714
Target:  5'- gCGCCGuguucguccUCGUCGGCGCuuuGCuGGUCc -3'
miRNA:   3'- -GCGGU---------AGCAGCCGCGcuuUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 75037 0.69 0.835531
Target:  5'- gGCUAUCGaUUGuCGCGAAGCccGGGUCg -3'
miRNA:   3'- gCGGUAGC-AGCcGCGCUUUG--UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 74911 0.68 0.84998
Target:  5'- aGCCAUgGUCGGCGCGuacucgugcaagauACgauaaaucucuaccGGGUCg -3'
miRNA:   3'- gCGGUAgCAGCCGCGCuu------------UG--------------UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 74636 0.68 0.874087
Target:  5'- gCGCUAcCGUCaGCGCGAAcccaggguGCAGGcCg -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUU--------UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 70259 0.75 0.468654
Target:  5'- uGCCcgCGUCGGCGUaAAACcuGGUCUg -3'
miRNA:   3'- gCGGuaGCAGCCGCGcUUUGu-CCAGA- -5'
24375 3' -55.6 NC_005264.1 + 69072 0.67 0.881182
Target:  5'- gGUCAUCGUCGuCGCGcaccGCAaGGUCa -3'
miRNA:   3'- gCGGUAGCAGCcGCGCuu--UGU-CCAGa -5'
24375 3' -55.6 NC_005264.1 + 66847 0.67 0.888058
Target:  5'- aCGCCGUCGccCGaCGCGAAAUAGaUCg -3'
miRNA:   3'- -GCGGUAGCa-GCcGCGCUUUGUCcAGa -5'
24375 3' -55.6 NC_005264.1 + 66624 0.66 0.929808
Target:  5'- gCGCCGUCG-CGGCcCGAGGCAaG-CUg -3'
miRNA:   3'- -GCGGUAGCaGCCGcGCUUUGUcCaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.