miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 18161 0.67 0.901141
Target:  5'- uGUCGUCGUCGGCGCcacugucGugGGGg-- -3'
miRNA:   3'- gCGGUAGCAGCCGCGcu-----UugUCCaga -5'
24375 3' -55.6 NC_005264.1 + 18302 0.67 0.901141
Target:  5'- -uCCGUCGUCGuuGCGCGAGGCcguccGUCUa -3'
miRNA:   3'- gcGGUAGCAGC--CGCGCUUUGuc---CAGA- -5'
24375 3' -55.6 NC_005264.1 + 18428 0.67 0.901141
Target:  5'- gCGCCcucUCGcUCGGCGCG----GGGUCg -3'
miRNA:   3'- -GCGGu--AGC-AGCCGCGCuuugUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 66847 0.67 0.888058
Target:  5'- aCGCCGUCGccCGaCGCGAAAUAGaUCg -3'
miRNA:   3'- -GCGGUAGCa-GCcGCGCUUUGUCcAGa -5'
24375 3' -55.6 NC_005264.1 + 54602 0.67 0.888058
Target:  5'- aCGCCggCcUCGGCGCGu-GCGGGa-- -3'
miRNA:   3'- -GCGGuaGcAGCCGCGCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 69072 0.67 0.881182
Target:  5'- gGUCAUCGUCGuCGCGcaccGCAaGGUCa -3'
miRNA:   3'- gCGGUAGCAGCcGCGCuu--UGU-CCAGa -5'
24375 3' -55.6 NC_005264.1 + 158987 0.67 0.880482
Target:  5'- aGCCcaAUCccCGGCGCaggacccaugccaGGAGCAGGUCUc -3'
miRNA:   3'- gCGG--UAGcaGCCGCG-------------CUUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 74636 0.68 0.874087
Target:  5'- gCGCUAcCGUCaGCGCGAAcccaggguGCAGGcCg -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUU--------UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 6494 0.68 0.866779
Target:  5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3'
miRNA:   3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 145931 0.68 0.866779
Target:  5'- cCGCCAUCGUC--CGCGGccGACGGGa-- -3'
miRNA:   3'- -GCGGUAGCAGccGCGCU--UUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 125521 0.68 0.866779
Target:  5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3'
miRNA:   3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 132241 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 13214 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 58027 0.68 0.858501
Target:  5'- gGCCGUCGUgCGGCgcccgcucgucucGCGAAAgAGGa-- -3'
miRNA:   3'- gCGGUAGCA-GCCG-------------CGCUUUgUCCaga -5'
24375 3' -55.6 NC_005264.1 + 117500 0.68 0.851547
Target:  5'- uCGCC-UCGUCucgGGCGCGgcGCGucugcGGUCg -3'
miRNA:   3'- -GCGGuAGCAG---CCGCGCuuUGU-----CCAGa -5'
24375 3' -55.6 NC_005264.1 + 74911 0.68 0.84998
Target:  5'- aGCCAUgGUCGGCGCGuacucgugcaagauACgauaaaucucuaccGGGUCg -3'
miRNA:   3'- gCGGUAgCAGCCGCGCuu------------UG--------------UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 3489 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 30845 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 149871 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 122516 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.