miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 133064 0.67 0.97759
Target:  5'- ---uACGUGGCGugcGAGCCgcgAGCGAgCUg -3'
miRNA:   3'- aauuUGUAUCGCu--CUCGG---UCGCUgGG- -5'
24375 5' -51.5 NC_005264.1 + 105856 0.67 0.975026
Target:  5'- -aAAGCA-AGCGAGcGCgGGCGACg- -3'
miRNA:   3'- aaUUUGUaUCGCUCuCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 48387 0.67 0.975026
Target:  5'- gUAGACuggGGCGucGGgCGGCGGCCa -3'
miRNA:   3'- aAUUUGua-UCGCucUCgGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 46443 0.67 0.975026
Target:  5'- -cGGGCucAGCGAGAGCCGaCGAagaggucuCCCg -3'
miRNA:   3'- aaUUUGuaUCGCUCUCGGUcGCU--------GGG- -5'
24375 5' -51.5 NC_005264.1 + 132323 0.67 0.969269
Target:  5'- -cAAACugcGCGAGAGCC-GCuuCCCg -3'
miRNA:   3'- aaUUUGuauCGCUCUCGGuCGcuGGG- -5'
24375 5' -51.5 NC_005264.1 + 129755 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 128865 0.67 0.975026
Target:  5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3'
miRNA:   3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 70379 0.67 0.975026
Target:  5'- aUGAACGgcucGGUG-GAGCUggagGGCGGCCUg -3'
miRNA:   3'- aAUUUGUa---UCGCuCUCGG----UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 66996 0.67 0.977342
Target:  5'- -cGAGCAacGGCGAGuGCUgccuggacggagcGGCGGCCUu -3'
miRNA:   3'- aaUUUGUa-UCGCUCuCGG-------------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 150216 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 101606 0.67 0.97759
Target:  5'- aUUGAACGUGGCGuaguucucuGGGCUcuuGCcGCCCg -3'
miRNA:   3'- -AAUUUGUAUCGCu--------CUCGGu--CGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 40904 0.67 0.979726
Target:  5'- -cGAGCAUaguuaccuucggcGGCGcGGGCUAGCuucugaacaGACCCg -3'
miRNA:   3'- aaUUUGUA-------------UCGCuCUCGGUCG---------CUGGG- -5'
24375 5' -51.5 NC_005264.1 + 47010 0.67 0.979954
Target:  5'- ---cGCAUAGCGcggucaguccuGGGGCgAGCGACg- -3'
miRNA:   3'- aauuUGUAUCGC-----------UCUCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 10729 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 117033 0.68 0.958949
Target:  5'- ---uACAgcGCGAucAGCgCGGCGGCCCa -3'
miRNA:   3'- aauuUGUauCGCUc-UCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 156138 0.68 0.958949
Target:  5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3'
miRNA:   3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 33911 0.68 0.960447
Target:  5'- -aAGACAUGGCG-GAGCgAGCccacacgaacaugaGCCCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGgUCGc-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 149938 0.68 0.955036
Target:  5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3'
miRNA:   3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 47854 0.68 0.955036
Target:  5'- ----cCGUGGCGGGGGC-AG-GGCCCa -3'
miRNA:   3'- aauuuGUAUCGCUCUCGgUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 93007 0.68 0.960447
Target:  5'- ----cCGUAGCGGGggcagucaaggcaguGGCUAGUGGCCUc -3'
miRNA:   3'- aauuuGUAUCGCUC---------------UCGGUCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.