miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 141464 0.68 0.965726
Target:  5'- -cGAGC--GGCGGGgccucuuuccaccGGCCgaGGCGGCCCg -3'
miRNA:   3'- aaUUUGuaUCGCUC-------------UCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 162311 0.68 0.962622
Target:  5'- -----gAUGGCuGGGuGCuCGGCGGCCCc -3'
miRNA:   3'- aauuugUAUCG-CUCuCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 18517 0.68 0.96606
Target:  5'- -cGAGCAUGGUGGGGGUccuCAGUGAUa- -3'
miRNA:   3'- aaUUUGUAUCGCUCUCG---GUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 14454 0.68 0.96606
Target:  5'- aUAGGCAUGGCGGcaAGCCucucGCGugCUu -3'
miRNA:   3'- aAUUUGUAUCGCUc-UCGGu---CGCugGG- -5'
24375 5' -51.5 NC_005264.1 + 2824 0.68 0.954631
Target:  5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3'
miRNA:   3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 121850 0.68 0.954631
Target:  5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3'
miRNA:   3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 149938 0.68 0.955036
Target:  5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3'
miRNA:   3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 59994 0.68 0.954631
Target:  5'- ---cGCG-AGCGAGAcgGCCGcguggccGCGGCCCa -3'
miRNA:   3'- aauuUGUaUCGCUCU--CGGU-------CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 154830 0.68 0.950448
Target:  5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3'
miRNA:   3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120142 0.68 0.96606
Target:  5'- -aGGACGgAGCGccGGCCGGCGAUgaCCg -3'
miRNA:   3'- aaUUUGUaUCGCucUCGGUCGCUG--GG- -5'
24375 5' -51.5 NC_005264.1 + 117033 0.68 0.958949
Target:  5'- ---uACAgcGCGAucAGCgCGGCGGCCCa -3'
miRNA:   3'- aauuUGUauCGCUc-UCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 156138 0.68 0.958949
Target:  5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3'
miRNA:   3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 33911 0.68 0.960447
Target:  5'- -aAGACAUGGCG-GAGCgAGCccacacgaacaugaGCCCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGgUCGc-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 93007 0.68 0.960447
Target:  5'- ----cCGUAGCGGGggcagucaaggcaguGGCUAGUGGCCUc -3'
miRNA:   3'- aauuuGUAUCGCUC---------------UCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 47854 0.68 0.955036
Target:  5'- ----cCGUGGCGGGGGC-AG-GGCCCa -3'
miRNA:   3'- aauuuGUAUCGCUCUCGgUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 132381 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120466 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 157410 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 5082 0.69 0.931719
Target:  5'- -gGAACGUggguuGGCGAggaGAGCCAgucuGCGGCCg -3'
miRNA:   3'- aaUUUGUA-----UCGCU---CUCGGU----CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 2992 0.69 0.941809
Target:  5'- ---cAUcgAGCGccgacuGGGCCGGCGGCUCg -3'
miRNA:   3'- aauuUGuaUCGCu-----CUCGGUCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.