Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 127909 | 0.69 | 0.946015 |
Target: 5'- aUAAACAUcuccugaGGCGGGcgccacugGGCCAGUaACCCu -3' miRNA: 3'- aAUUUGUA-------UCGCUC--------UCGGUCGcUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 162311 | 0.68 | 0.962622 |
Target: 5'- -----gAUGGCuGGGuGCuCGGCGGCCCc -3' miRNA: 3'- aauuugUAUCG-CUCuCG-GUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 35804 | 0.68 | 0.950448 |
Target: 5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3' miRNA: 3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 150798 | 0.68 | 0.950878 |
Target: 5'- -gGGGCGUguggGGCaGGAGCgCAGCGACUg -3' miRNA: 3'- aaUUUGUA----UCGcUCUCG-GUCGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 114097 | 0.68 | 0.958949 |
Target: 5'- -gGAGCuuGUAGUc-GGGCCAGuCGGCCCu -3' miRNA: 3'- aaUUUG--UAUCGcuCUCGGUC-GCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 2824 | 0.68 | 0.954631 |
Target: 5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3' miRNA: 3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 30912 | 0.68 | 0.955036 |
Target: 5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3' miRNA: 3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 37111 | 0.68 | 0.958949 |
Target: 5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3' miRNA: 3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 95349 | 0.68 | 0.962622 |
Target: 5'- -gAAACGgacucGGCG-GGG-CGGCGGCCCg -3' miRNA: 3'- aaUUUGUa----UCGCuCUCgGUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 141464 | 0.68 | 0.965726 |
Target: 5'- -cGAGC--GGCGGGgccucuuuccaccGGCCgaGGCGGCCCg -3' miRNA: 3'- aaUUUGuaUCGCUC-------------UCGG--UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 18517 | 0.68 | 0.96606 |
Target: 5'- -cGAGCAUGGUGGGGGUccuCAGUGAUa- -3' miRNA: 3'- aaUUUGUAUCGCUCUCG---GUCGCUGgg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 33911 | 0.68 | 0.960447 |
Target: 5'- -aAGACAUGGCG-GAGCgAGCccacacgaacaugaGCCCg -3' miRNA: 3'- aaUUUGUAUCGCuCUCGgUCGc-------------UGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 93007 | 0.68 | 0.960447 |
Target: 5'- ----cCGUAGCGGGggcagucaaggcaguGGCUAGUGGCCUc -3' miRNA: 3'- aauuuGUAUCGCUC---------------UCGGUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 149938 | 0.68 | 0.955036 |
Target: 5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3' miRNA: 3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 47854 | 0.68 | 0.955036 |
Target: 5'- ----cCGUGGCGGGGGC-AG-GGCCCa -3' miRNA: 3'- aauuuGUAUCGCUCUCGgUCgCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 121850 | 0.68 | 0.954631 |
Target: 5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3' miRNA: 3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 154830 | 0.68 | 0.950448 |
Target: 5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3' miRNA: 3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 156138 | 0.68 | 0.958949 |
Target: 5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3' miRNA: 3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 117033 | 0.68 | 0.958949 |
Target: 5'- ---uACAgcGCGAucAGCgCGGCGGCCCa -3' miRNA: 3'- aauuUGUauCGCUc-UCG-GUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 14454 | 0.68 | 0.96606 |
Target: 5'- aUAGGCAUGGCGGcaAGCCucucGCGugCUu -3' miRNA: 3'- aAUUUGUAUCGCUc-UCGGu---CGCugGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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