miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 14454 0.68 0.96606
Target:  5'- aUAGGCAUGGCGGcaAGCCucucGCGugCUu -3'
miRNA:   3'- aAUUUGUAUCGCUc-UCGGu---CGCugGG- -5'
24375 5' -51.5 NC_005264.1 + 120142 0.68 0.96606
Target:  5'- -aGGACGgAGCGccGGCCGGCGAUgaCCg -3'
miRNA:   3'- aaUUUGUaUCGCucUCGGUCGCUG--GG- -5'
24375 5' -51.5 NC_005264.1 + 10729 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 132323 0.67 0.969269
Target:  5'- -cAAACugcGCGAGAGCC-GCuuCCCg -3'
miRNA:   3'- aaUUUGuauCGCUCUCGGuCGcuGGG- -5'
24375 5' -51.5 NC_005264.1 + 129755 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 124779 0.67 0.972255
Target:  5'- gUAGGCAUuGUGAGAGC-GGCG-CCUu -3'
miRNA:   3'- aAUUUGUAuCGCUCUCGgUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 73251 0.67 0.972255
Target:  5'- -aGGACGUGGCGuGAGCCAuugucuauGC-ACCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGGU--------CGcUGGg -5'
24375 5' -51.5 NC_005264.1 + 47942 0.67 0.975026
Target:  5'- -aGGAC--GGCGAGAcccgGuCCAGCGugCCc -3'
miRNA:   3'- aaUUUGuaUCGCUCU----C-GGUCGCugGG- -5'
24375 5' -51.5 NC_005264.1 + 151341 0.67 0.975026
Target:  5'- ---cACAUGgGCaAGGGCCGcGCGGCCUu -3'
miRNA:   3'- aauuUGUAU-CGcUCUCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 9839 0.67 0.975026
Target:  5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3'
miRNA:   3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 46443 0.67 0.975026
Target:  5'- -cGGGCucAGCGAGAGCCGaCGAagaggucuCCCg -3'
miRNA:   3'- aaUUUGuaUCGCUCUCGGUcGCU--------GGG- -5'
24375 5' -51.5 NC_005264.1 + 48387 0.67 0.975026
Target:  5'- gUAGACuggGGCGucGGgCGGCGGCCa -3'
miRNA:   3'- aAUUUGua-UCGCucUCgGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 105856 0.67 0.975026
Target:  5'- -aAAGCA-AGCGAGcGCgGGCGACg- -3'
miRNA:   3'- aaUUUGUaUCGCUCuCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 128865 0.67 0.975026
Target:  5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3'
miRNA:   3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 70379 0.67 0.975026
Target:  5'- aUGAACGgcucGGUG-GAGCUggagGGCGGCCUg -3'
miRNA:   3'- aAUUUGUa---UCGCuCUCGG----UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 66996 0.67 0.977342
Target:  5'- -cGAGCAacGGCGAGuGCUgccuggacggagcGGCGGCCUu -3'
miRNA:   3'- aaUUUGUa-UCGCUCuCGG-------------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 101606 0.67 0.97759
Target:  5'- aUUGAACGUGGCGuaguucucuGGGCUcuuGCcGCCCg -3'
miRNA:   3'- -AAUUUGUAUCGCu--------CUCGGu--CGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 31189 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 150216 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 133064 0.67 0.97759
Target:  5'- ---uACGUGGCGugcGAGCCgcgAGCGAgCUg -3'
miRNA:   3'- aauuUGUAUCGCu--CUCGG---UCGCUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.