miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 57991 0.66 0.985937
Target:  5'- ---cGCGcGGCGGccguGGCuCAGCGGCCCc -3'
miRNA:   3'- aauuUGUaUCGCUc---UCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 59994 0.68 0.954631
Target:  5'- ---cGCG-AGCGAGAcgGCCGcguggccGCGGCCCa -3'
miRNA:   3'- aauuUGUaUCGCUCU--CGGU-------CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 64931 0.66 0.982128
Target:  5'- -gGAAgAaAGCGAGAGCCuucGCGagGCCg -3'
miRNA:   3'- aaUUUgUaUCGCUCUCGGu--CGC--UGGg -5'
24375 5' -51.5 NC_005264.1 + 66996 0.67 0.977342
Target:  5'- -cGAGCAacGGCGAGuGCUgccuggacggagcGGCGGCCUu -3'
miRNA:   3'- aaUUUGUa-UCGCUCuCGG-------------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 67939 0.66 0.990447
Target:  5'- -----uGUAGCGGGGuucccggcGCCuGCGGCUCg -3'
miRNA:   3'- aauuugUAUCGCUCU--------CGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 68986 0.73 0.768221
Target:  5'- --cAGCuUAGCG--GGCCAGUGGCCCg -3'
miRNA:   3'- aauUUGuAUCGCucUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 70193 0.7 0.908443
Target:  5'- ---uGCGgcGCGAGGGCCAcGCGGCa- -3'
miRNA:   3'- aauuUGUauCGCUCUCGGU-CGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 70379 0.67 0.975026
Target:  5'- aUGAACGgcucGGUG-GAGCUggagGGCGGCCUg -3'
miRNA:   3'- aAUUUGUa---UCGCuCUCGG----UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 73251 0.67 0.972255
Target:  5'- -aGGACGUGGCGuGAGCCAuugucuauGC-ACCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGGU--------CGcUGGg -5'
24375 5' -51.5 NC_005264.1 + 76237 0.66 0.985937
Target:  5'- --cAACGUAGCGcuuggguguGGAGCC-GUGACUg -3'
miRNA:   3'- aauUUGUAUCGC---------UCUCGGuCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 76925 0.66 0.990447
Target:  5'- -cAGACGcGGUcAGAGUCAGCG-CCUg -3'
miRNA:   3'- aaUUUGUaUCGcUCUCGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 79404 0.77 0.590981
Target:  5'- -cGGGCGUGGCGAG-GCCgcGGCGgaACCCa -3'
miRNA:   3'- aaUUUGUAUCGCUCuCGG--UCGC--UGGG- -5'
24375 5' -51.5 NC_005264.1 + 82955 0.66 0.990447
Target:  5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3'
miRNA:   3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5'
24375 5' -51.5 NC_005264.1 + 84305 0.72 0.815392
Target:  5'- ---cGCAUAGCGuaaacaAGAcGCCAGCGGCgCg -3'
miRNA:   3'- aauuUGUAUCGC------UCU-CGGUCGCUGgG- -5'
24375 5' -51.5 NC_005264.1 + 86528 0.7 0.920597
Target:  5'- ---uAUAcAGCGAauGAGCCAGCaGCCCc -3'
miRNA:   3'- aauuUGUaUCGCU--CUCGGUCGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 88957 0.7 0.908443
Target:  5'- ---uGCu--GCGAGAGUCGGCGACg- -3'
miRNA:   3'- aauuUGuauCGCUCUCGGUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 89881 0.77 0.580419
Target:  5'- -gAAACGUAGUuAGGGCCAGCGcCUCg -3'
miRNA:   3'- aaUUUGUAUCGcUCUCGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 92929 0.66 0.982128
Target:  5'- gUGAGCA-AG-GAGuGUCGGCGGCUCu -3'
miRNA:   3'- aAUUUGUaUCgCUCuCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 93007 0.68 0.960447
Target:  5'- ----cCGUAGCGGGggcagucaaggcaguGGCUAGUGGCCUc -3'
miRNA:   3'- aauuuGUAUCGCUC---------------UCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 93870 0.66 0.982128
Target:  5'- cUAAGC-UGGCGAGccAGgCGGCgGACCUu -3'
miRNA:   3'- aAUUUGuAUCGCUC--UCgGUCG-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.