miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 94527 0.66 0.987592
Target:  5'- ---cACGUGG-GAGGG-CAGCGGCgCCg -3'
miRNA:   3'- aauuUGUAUCgCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 94946 0.69 0.941809
Target:  5'- cUAcGCGUcGGUGGuGGGCCucGCGGCCCa -3'
miRNA:   3'- aAUuUGUA-UCGCU-CUCGGu-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 95349 0.68 0.962622
Target:  5'- -gAAACGgacucGGCG-GGG-CGGCGGCCCg -3'
miRNA:   3'- aaUUUGUa----UCGCuCUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 96252 0.66 0.990318
Target:  5'- ---cGCAgcccAGCGAGAGCCuguaccagcagguGGCGGCg- -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGG-------------UCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 100088 0.7 0.901983
Target:  5'- --uAGCAUGGCGgccgcGGGGCuCAGCGACg- -3'
miRNA:   3'- aauUUGUAUCGC-----UCUCG-GUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 101027 0.66 0.989092
Target:  5'- -cAGGCAcugcccGGCGAu-GCCcGCGGCCCg -3'
miRNA:   3'- aaUUUGUa-----UCGCUcuCGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 101606 0.67 0.97759
Target:  5'- aUUGAACGUGGCGuaguucucuGGGCUcuuGCcGCCCg -3'
miRNA:   3'- -AAUUUGUAUCGCu--------CUCGGu--CGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 105856 0.67 0.975026
Target:  5'- -aAAGCA-AGCGAGcGCgGGCGACg- -3'
miRNA:   3'- aaUUUGUaUCGCUCuCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 106310 0.69 0.931719
Target:  5'- --cGACAgcuGCGGcGGGCagGGCGACCCc -3'
miRNA:   3'- aauUUGUau-CGCU-CUCGg-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 110496 0.69 0.931719
Target:  5'- -cGGACGUGuuGUGGGGcagcccGcCCAGCGACCCu -3'
miRNA:   3'- aaUUUGUAU--CGCUCU------C-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 113494 0.7 0.908443
Target:  5'- --------cGCGAGuGCCAaccGCGACCCu -3'
miRNA:   3'- aauuuguauCGCUCuCGGU---CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 113870 0.66 0.984119
Target:  5'- -gGAAgAguucuGCGccuacugcuuGGAGCgCAGCGGCCCg -3'
miRNA:   3'- aaUUUgUau---CGC----------UCUCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 114097 0.68 0.958949
Target:  5'- -gGAGCuuGUAGUc-GGGCCAGuCGGCCCu -3'
miRNA:   3'- aaUUUG--UAUCGcuCUCGGUC-GCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 115458 0.66 0.990318
Target:  5'- ---cACGUAGCuuuauugacaacuGGGGGCCAGa-GCCCu -3'
miRNA:   3'- aauuUGUAUCG-------------CUCUCGGUCgcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 115727 0.66 0.985937
Target:  5'- --cGGCAUGGUaGGGGGCgCGGCGAgCg -3'
miRNA:   3'- aauUUGUAUCG-CUCUCG-GUCGCUgGg -5'
24375 5' -51.5 NC_005264.1 + 117033 0.68 0.958949
Target:  5'- ---uACAgcGCGAucAGCgCGGCGGCCCa -3'
miRNA:   3'- aauuUGUauCGCUc-UCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 118246 0.66 0.990318
Target:  5'- -gGAACAaggacccUAGCGcAGAGCUGGCGugguuGCCg -3'
miRNA:   3'- aaUUUGU-------AUCGC-UCUCGGUCGC-----UGGg -5'
24375 5' -51.5 NC_005264.1 + 120077 0.66 0.989092
Target:  5'- -cGGACGccggcUAGCGGGAGUC-GUG-CCCa -3'
miRNA:   3'- aaUUUGU-----AUCGCUCUCGGuCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 120142 0.68 0.96606
Target:  5'- -aGGACGgAGCGccGGCCGGCGAUgaCCg -3'
miRNA:   3'- aaUUUGUaUCGCucUCGGUCGCUG--GG- -5'
24375 5' -51.5 NC_005264.1 + 120466 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.