miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 140856 0.72 0.849953
Target:  5'- -------aGGCGAcgacAGCCGGCGGCCCu -3'
miRNA:   3'- aauuuguaUCGCUc---UCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 141464 0.68 0.965726
Target:  5'- -cGAGC--GGCGGGgccucuuuccaccGGCCgaGGCGGCCCg -3'
miRNA:   3'- aaUUUGuaUCGCUC-------------UCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 144087 0.72 0.844974
Target:  5'- -aAGAUGUcggAGCGcgccucgucuuucucGGAGaCCAGCGACCCa -3'
miRNA:   3'- aaUUUGUA---UCGC---------------UCUC-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 145841 0.66 0.987434
Target:  5'- -aAGACA-GGCGAGcugcgcguuauugGGCCaauGGCGGCCUc -3'
miRNA:   3'- aaUUUGUaUCGCUC-------------UCGG---UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 149938 0.68 0.955036
Target:  5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3'
miRNA:   3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 150216 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 150798 0.68 0.950878
Target:  5'- -gGGGCGUguggGGCaGGAGCgCAGCGACUg -3'
miRNA:   3'- aaUUUGUA----UCGcUCUCG-GUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 151341 0.67 0.975026
Target:  5'- ---cACAUGgGCaAGGGCCGcGCGGCCUu -3'
miRNA:   3'- aauuUGUAU-CGcUCUCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 151393 0.74 0.71778
Target:  5'- -gGGGCuguucUGGCGAGGauGCCGGCGGCCg -3'
miRNA:   3'- aaUUUGu----AUCGCUCU--CGGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 153079 0.76 0.633471
Target:  5'- -aGAGCGUAGgUGGGAGCaCGGCGGCUUg -3'
miRNA:   3'- aaUUUGUAUC-GCUCUCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 153270 0.7 0.91404
Target:  5'- aUAGACgaacccggcuucuGUAGCGAGGcGCgGGCGACgCg -3'
miRNA:   3'- aAUUUG-------------UAUCGCUCU-CGgUCGCUGgG- -5'
24375 5' -51.5 NC_005264.1 + 154830 0.68 0.950448
Target:  5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3'
miRNA:   3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 156138 0.68 0.958949
Target:  5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3'
miRNA:   3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 157410 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 158045 0.66 0.990447
Target:  5'- aUGGACcagGGCGuucGCCAaCGACCCa -3'
miRNA:   3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 162311 0.68 0.962622
Target:  5'- -----gAUGGCuGGGuGCuCGGCGGCCCc -3'
miRNA:   3'- aauuugUAUCG-CUCuCG-GUCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.