miRNA display CGI


Results 21 - 40 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 133064 0.67 0.97759
Target:  5'- ---uACGUGGCGugcGAGCCgcgAGCGAgCUg -3'
miRNA:   3'- aauuUGUAUCGCu--CUCGG---UCGCUgGG- -5'
24375 5' -51.5 NC_005264.1 + 132381 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 132323 0.67 0.969269
Target:  5'- -cAAACugcGCGAGAGCC-GCuuCCCg -3'
miRNA:   3'- aaUUUGuauCGCUCUCGGuCGcuGGG- -5'
24375 5' -51.5 NC_005264.1 + 131699 0.73 0.777957
Target:  5'- -cAAGCGUAGCGuGGGCCugcGCGGCg- -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGGu--CGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 129755 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 128865 0.67 0.975026
Target:  5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3'
miRNA:   3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 128516 0.71 0.865985
Target:  5'- ---cGCGUcAGCGAGucAGCCAGCGucaggcgcggcGCCCu -3'
miRNA:   3'- aauuUGUA-UCGCUC--UCGGUCGC-----------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 127909 0.69 0.946015
Target:  5'- aUAAACAUcuccugaGGCGGGcgccacugGGCCAGUaACCCu -3'
miRNA:   3'- aAUUUGUA-------UCGCUC--------UCGGUCGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 127804 0.66 0.987592
Target:  5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3'
miRNA:   3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5'
24375 5' -51.5 NC_005264.1 + 126927 1.09 0.007103
Target:  5'- cUUAAACAUAGCGAGAGCCAGCGACCCc -3'
miRNA:   3'- -AAUUUGUAUCGCUCUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 125696 0.72 0.849953
Target:  5'- -cGAACAUGGaGAGAccGCCGGCG-CCUg -3'
miRNA:   3'- aaUUUGUAUCgCUCU--CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 125159 0.74 0.728068
Target:  5'- ---uGCGggagGGCGAGGGCCGcGCG-CCCg -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGGU-CGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 124779 0.67 0.972255
Target:  5'- gUAGGCAUuGUGAGAGC-GGCG-CCUu -3'
miRNA:   3'- aAUUUGUAuCGCUCUCGgUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 122016 0.69 0.926287
Target:  5'- ----cCAUAGCGGgaucuuGAGUCucGGCGACCCc -3'
miRNA:   3'- aauuuGUAUCGCU------CUCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 121854 0.74 0.738267
Target:  5'- -gGAACAUAaGCGAGGGUCGGCGcaagcuUCCa -3'
miRNA:   3'- aaUUUGUAU-CGCUCUCGGUCGCu-----GGG- -5'
24375 5' -51.5 NC_005264.1 + 121850 0.68 0.954631
Target:  5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3'
miRNA:   3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 120466 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 120142 0.68 0.96606
Target:  5'- -aGGACGgAGCGccGGCCGGCGAUgaCCg -3'
miRNA:   3'- aaUUUGUaUCGCucUCGGUCGCUG--GG- -5'
24375 5' -51.5 NC_005264.1 + 120077 0.66 0.989092
Target:  5'- -cGGACGccggcUAGCGGGAGUC-GUG-CCCa -3'
miRNA:   3'- aaUUUGU-----AUCGCUCUCGGuCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 118246 0.66 0.990318
Target:  5'- -gGAACAaggacccUAGCGcAGAGCUGGCGugguuGCCg -3'
miRNA:   3'- aaUUUGU-------AUCGC-UCUCGGUCGC-----UGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.