Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 156138 | 0.68 | 0.958949 |
Target: 5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3' miRNA: 3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 117033 | 0.68 | 0.958949 |
Target: 5'- ---uACAgcGCGAucAGCgCGGCGGCCCa -3' miRNA: 3'- aauuUGUauCGCUc-UCG-GUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 149938 | 0.68 | 0.955036 |
Target: 5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3' miRNA: 3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 47854 | 0.68 | 0.955036 |
Target: 5'- ----cCGUGGCGGGGGC-AG-GGCCCa -3' miRNA: 3'- aauuuGUAUCGCUCUCGgUCgCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 121850 | 0.68 | 0.954631 |
Target: 5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3' miRNA: 3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 59994 | 0.68 | 0.954631 |
Target: 5'- ---cGCG-AGCGAGAcgGCCGcguggccGCGGCCCa -3' miRNA: 3'- aauuUGUaUCGCUCU--CGGU-------CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 154830 | 0.68 | 0.950448 |
Target: 5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3' miRNA: 3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 2992 | 0.69 | 0.941809 |
Target: 5'- ---cAUcgAGCGccgacuGGGCCGGCGGCUCg -3' miRNA: 3'- aauuUGuaUCGCu-----CUCGGUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 8532 | 0.69 | 0.936892 |
Target: 5'- -gAAACAUcGUaaGAGGGCCAGCaaaaGCCCc -3' miRNA: 3'- aaUUUGUAuCG--CUCUCGGUCGc---UGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 132381 | 0.69 | 0.931719 |
Target: 5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3' miRNA: 3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 5082 | 0.69 | 0.931719 |
Target: 5'- -gGAACGUggguuGGCGAggaGAGCCAgucuGCGGCCg -3' miRNA: 3'- aaUUUGUA-----UCGCU---CUCGGU----CGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 120077 | 0.66 | 0.989092 |
Target: 5'- -cGGACGccggcUAGCGGGAGUC-GUG-CCCa -3' miRNA: 3'- aaUUUGU-----AUCGCUCUCGGuCGCuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 101027 | 0.66 | 0.989092 |
Target: 5'- -cAGGCAcugcccGGCGAu-GCCcGCGGCCCg -3' miRNA: 3'- aaUUUGUa-----UCGCUcuCGGuCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 96252 | 0.66 | 0.990318 |
Target: 5'- ---cGCAgcccAGCGAGAGCCuguaccagcagguGGCGGCg- -3' miRNA: 3'- aauuUGUa---UCGCUCUCGG-------------UCGCUGgg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 118246 | 0.66 | 0.990318 |
Target: 5'- -gGAACAaggacccUAGCGcAGAGCUGGCGugguuGCCg -3' miRNA: 3'- aaUUUGU-------AUCGC-UCUCGGUCGC-----UGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 76925 | 0.66 | 0.990447 |
Target: 5'- -cAGACGcGGUcAGAGUCAGCG-CCUg -3' miRNA: 3'- aaUUUGUaUCGcUCUCGGUCGCuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 82955 | 0.66 | 0.990447 |
Target: 5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3' miRNA: 3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 16330 | 0.66 | 0.990447 |
Target: 5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3' miRNA: 3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 39018 | 0.66 | 0.990447 |
Target: 5'- aUGGACcagGGCGuucGCCAaCGACCCa -3' miRNA: 3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 126927 | 1.09 | 0.007103 |
Target: 5'- cUUAAACAUAGCGAGAGCCAGCGACCCc -3' miRNA: 3'- -AAUUUGUAUCGCUCUCGGUCGCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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