miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 73251 0.67 0.972255
Target:  5'- -aGGACGUGGCGuGAGCCAuugucuauGC-ACCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGGU--------CGcUGGg -5'
24375 5' -51.5 NC_005264.1 + 124779 0.67 0.972255
Target:  5'- gUAGGCAUuGUGAGAGC-GGCG-CCUu -3'
miRNA:   3'- aAUUUGUAuCGCUCUCGgUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 132323 0.67 0.969269
Target:  5'- -cAAACugcGCGAGAGCC-GCuuCCCg -3'
miRNA:   3'- aaUUUGuauCGCUCUCGGuCGcuGGG- -5'
24375 5' -51.5 NC_005264.1 + 10729 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120142 0.68 0.96606
Target:  5'- -aGGACGgAGCGccGGCCGGCGAUgaCCg -3'
miRNA:   3'- aaUUUGUaUCGCucUCGGUCGCUG--GG- -5'
24375 5' -51.5 NC_005264.1 + 56594 0.66 0.984119
Target:  5'- --cAGCAggcGCGAGcGCCucGCGACCg -3'
miRNA:   3'- aauUUGUau-CGCUCuCGGu-CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 20143 0.66 0.985937
Target:  5'- -cAGGCgAUGGCGcgccGCCGGCG-CCCa -3'
miRNA:   3'- aaUUUG-UAUCGCucu-CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 39018 0.66 0.990447
Target:  5'- aUGGACcagGGCGuucGCCAaCGACCCa -3'
miRNA:   3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 16330 0.66 0.990447
Target:  5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3'
miRNA:   3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 82955 0.66 0.990447
Target:  5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3'
miRNA:   3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5'
24375 5' -51.5 NC_005264.1 + 76925 0.66 0.990447
Target:  5'- -cAGACGcGGUcAGAGUCAGCG-CCUg -3'
miRNA:   3'- aaUUUGUaUCGcUCUCGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 118246 0.66 0.990318
Target:  5'- -gGAACAaggacccUAGCGcAGAGCUGGCGugguuGCCg -3'
miRNA:   3'- aaUUUGU-------AUCGC-UCUCGGUCGC-----UGGg -5'
24375 5' -51.5 NC_005264.1 + 96252 0.66 0.990318
Target:  5'- ---cGCAgcccAGCGAGAGCCuguaccagcagguGGCGGCg- -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGG-------------UCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 101027 0.66 0.989092
Target:  5'- -cAGGCAcugcccGGCGAu-GCCcGCGGCCCg -3'
miRNA:   3'- aaUUUGUa-----UCGCUcuCGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120077 0.66 0.989092
Target:  5'- -cGGACGccggcUAGCGGGAGUC-GUG-CCCa -3'
miRNA:   3'- aaUUUGU-----AUCGCUCUCGGuCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 28379 0.66 0.987592
Target:  5'- aUAAACGUAGCGgcguguauAGAuuCCAGCGGCa- -3'
miRNA:   3'- aAUUUGUAUCGC--------UCUc-GGUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 8778 0.66 0.987592
Target:  5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3'
miRNA:   3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5'
24375 5' -51.5 NC_005264.1 + 94527 0.66 0.987592
Target:  5'- ---cACGUGG-GAGGG-CAGCGGCgCCg -3'
miRNA:   3'- aauuUGUAUCgCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 76237 0.66 0.985937
Target:  5'- --cAACGUAGCGcuuggguguGGAGCC-GUGACUg -3'
miRNA:   3'- aauUUGUAUCGC---------UCUCGGuCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 115727 0.66 0.985937
Target:  5'- --cGGCAUGGUaGGGGGCgCGGCGAgCg -3'
miRNA:   3'- aauUUGUAUCG-CUCUCG-GUCGCUgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.