Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 101027 | 0.66 | 0.989092 |
Target: 5'- -cAGGCAcugcccGGCGAu-GCCcGCGGCCCg -3' miRNA: 3'- aaUUUGUa-----UCGCUcuCGGuCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 96252 | 0.66 | 0.990318 |
Target: 5'- ---cGCAgcccAGCGAGAGCCuguaccagcagguGGCGGCg- -3' miRNA: 3'- aauuUGUa---UCGCUCUCGG-------------UCGCUGgg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 118246 | 0.66 | 0.990318 |
Target: 5'- -gGAACAaggacccUAGCGcAGAGCUGGCGugguuGCCg -3' miRNA: 3'- aaUUUGU-------AUCGC-UCUCGGUCGC-----UGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 76925 | 0.66 | 0.990447 |
Target: 5'- -cAGACGcGGUcAGAGUCAGCG-CCUg -3' miRNA: 3'- aaUUUGUaUCGcUCUCGGUCGCuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 82955 | 0.66 | 0.990447 |
Target: 5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3' miRNA: 3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 16330 | 0.66 | 0.990447 |
Target: 5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3' miRNA: 3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 39018 | 0.66 | 0.990447 |
Target: 5'- aUGGACcagGGCGuucGCCAaCGACCCa -3' miRNA: 3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 94527 | 0.66 | 0.987592 |
Target: 5'- ---cACGUGG-GAGGG-CAGCGGCgCCg -3' miRNA: 3'- aauuUGUAUCgCUCUCgGUCGCUG-GG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 76237 | 0.66 | 0.985937 |
Target: 5'- --cAACGUAGCGcuuggguguGGAGCC-GUGACUg -3' miRNA: 3'- aauUUGUAUCGC---------UCUCGGuCGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 115727 | 0.66 | 0.985937 |
Target: 5'- --cGGCAUGGUaGGGGGCgCGGCGAgCg -3' miRNA: 3'- aauUUGUAUCG-CUCUCG-GUCGCUgGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 9839 | 0.67 | 0.975026 |
Target: 5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3' miRNA: 3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 46443 | 0.67 | 0.975026 |
Target: 5'- -cGGGCucAGCGAGAGCCGaCGAagaggucuCCCg -3' miRNA: 3'- aaUUUGuaUCGCUCUCGGUcGCU--------GGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 48387 | 0.67 | 0.975026 |
Target: 5'- gUAGACuggGGCGucGGgCGGCGGCCa -3' miRNA: 3'- aAUUUGua-UCGCucUCgGUCGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 105856 | 0.67 | 0.975026 |
Target: 5'- -aAAGCA-AGCGAGcGCgGGCGACg- -3' miRNA: 3'- aaUUUGUaUCGCUCuCGgUCGCUGgg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 47942 | 0.67 | 0.975026 |
Target: 5'- -aGGAC--GGCGAGAcccgGuCCAGCGugCCc -3' miRNA: 3'- aaUUUGuaUCGCUCU----C-GGUCGCugGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 31189 | 0.67 | 0.97759 |
Target: 5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3' miRNA: 3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 20892 | 0.66 | 0.982128 |
Target: 5'- gUUAAACAUgaGGCcu-GGCUcgGGCGGCCCa -3' miRNA: 3'- -AAUUUGUA--UCGcucUCGG--UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 64931 | 0.66 | 0.982128 |
Target: 5'- -gGAAgAaAGCGAGAGCCuucGCGagGCCg -3' miRNA: 3'- aaUUUgUaUCGCUCUCGGu--CGC--UGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 56594 | 0.66 | 0.984119 |
Target: 5'- --cAGCAggcGCGAGcGCCucGCGACCg -3' miRNA: 3'- aauUUGUau-CGCUCuCGGu-CGCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 20143 | 0.66 | 0.985937 |
Target: 5'- -cAGGCgAUGGCGcgccGCCGGCG-CCCa -3' miRNA: 3'- aaUUUG-UAUCGCucu-CGGUCGCuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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