Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 46443 | 0.67 | 0.975026 |
Target: 5'- -cGGGCucAGCGAGAGCCGaCGAagaggucuCCCg -3' miRNA: 3'- aaUUUGuaUCGCUCUCGGUcGCU--------GGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 47942 | 0.67 | 0.975026 |
Target: 5'- -aGGAC--GGCGAGAcccgGuCCAGCGugCCc -3' miRNA: 3'- aaUUUGuaUCGCUCU----C-GGUCGCugGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 8778 | 0.66 | 0.987592 |
Target: 5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3' miRNA: 3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 82955 | 0.66 | 0.990447 |
Target: 5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3' miRNA: 3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 162311 | 0.68 | 0.962622 |
Target: 5'- -----gAUGGCuGGGuGCuCGGCGGCCCc -3' miRNA: 3'- aauuugUAUCG-CUCuCG-GUCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 132323 | 0.67 | 0.969269 |
Target: 5'- -cAAACugcGCGAGAGCC-GCuuCCCg -3' miRNA: 3'- aaUUUGuauCGCUCUCGGuCGcuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 20892 | 0.66 | 0.982128 |
Target: 5'- gUUAAACAUgaGGCcu-GGCUcgGGCGGCCCa -3' miRNA: 3'- -AAUUUGUA--UCGcucUCGG--UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 16330 | 0.66 | 0.990447 |
Target: 5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3' miRNA: 3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 124779 | 0.67 | 0.972255 |
Target: 5'- gUAGGCAUuGUGAGAGC-GGCG-CCUu -3' miRNA: 3'- aAUUUGUAuCGCUCUCGgUCGCuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 39018 | 0.66 | 0.990447 |
Target: 5'- aUGGACcagGGCGuucGCCAaCGACCCa -3' miRNA: 3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 31189 | 0.67 | 0.97759 |
Target: 5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3' miRNA: 3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 9839 | 0.67 | 0.975026 |
Target: 5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3' miRNA: 3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 20143 | 0.66 | 0.985937 |
Target: 5'- -cAGGCgAUGGCGcgccGCCGGCG-CCCa -3' miRNA: 3'- aaUUUG-UAUCGCucu-CGGUCGCuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 94527 | 0.66 | 0.987592 |
Target: 5'- ---cACGUGG-GAGGG-CAGCGGCgCCg -3' miRNA: 3'- aauuUGUAUCgCUCUCgGUCGCUG-GG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 101027 | 0.66 | 0.989092 |
Target: 5'- -cAGGCAcugcccGGCGAu-GCCcGCGGCCCg -3' miRNA: 3'- aaUUUGUa-----UCGCUcuCGGuCGCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 76925 | 0.66 | 0.990447 |
Target: 5'- -cAGACGcGGUcAGAGUCAGCG-CCUg -3' miRNA: 3'- aaUUUGUaUCGcUCUCGGUCGCuGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 2824 | 0.68 | 0.954631 |
Target: 5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3' miRNA: 3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 114097 | 0.68 | 0.958949 |
Target: 5'- -gGAGCuuGUAGUc-GGGCCAGuCGGCCCu -3' miRNA: 3'- aaUUUG--UAUCGcuCUCGGUC-GCUGGG- -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 18517 | 0.68 | 0.96606 |
Target: 5'- -cGAGCAUGGUGGGGGUccuCAGUGAUa- -3' miRNA: 3'- aaUUUGUAUCGCUCUCG---GUCGCUGgg -5' |
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24375 | 5' | -51.5 | NC_005264.1 | + | 10729 | 0.67 | 0.969269 |
Target: 5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3' miRNA: 3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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