miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 110496 0.69 0.931719
Target:  5'- -cGGACGUGuuGUGGGGcagcccGcCCAGCGACCCu -3'
miRNA:   3'- aaUUUGUAU--CGCUCU------C-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 132323 0.67 0.969269
Target:  5'- -cAAACugcGCGAGAGCC-GCuuCCCg -3'
miRNA:   3'- aaUUUGuauCGCUCUCGGuCGcuGGG- -5'
24375 5' -51.5 NC_005264.1 + 76237 0.66 0.985937
Target:  5'- --cAACGUAGCGcuuggguguGGAGCC-GUGACUg -3'
miRNA:   3'- aauUUGUAUCGC---------UCUCGGuCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 94946 0.69 0.941809
Target:  5'- cUAcGCGUcGGUGGuGGGCCucGCGGCCCa -3'
miRNA:   3'- aAUuUGUA-UCGCU-CUCGGu-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 94527 0.66 0.987592
Target:  5'- ---cACGUGG-GAGGG-CAGCGGCgCCg -3'
miRNA:   3'- aauuUGUAUCgCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 121854 0.74 0.738267
Target:  5'- -gGAACAUAaGCGAGGGUCGGCGcaagcuUCCa -3'
miRNA:   3'- aaUUUGUAU-CGCUCUCGGUCGCu-----GGG- -5'
24375 5' -51.5 NC_005264.1 + 20143 0.66 0.985937
Target:  5'- -cAGGCgAUGGCGcgccGCCGGCG-CCCa -3'
miRNA:   3'- aaUUUG-UAUCGCucu-CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 68986 0.73 0.768221
Target:  5'- --cAGCuUAGCG--GGCCAGUGGCCCg -3'
miRNA:   3'- aauUUGuAUCGCucUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 131699 0.73 0.777957
Target:  5'- -cAAGCGUAGCGuGGGCCugcGCGGCg- -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGGu--CGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 125696 0.72 0.849953
Target:  5'- -cGAACAUGGaGAGAccGCCGGCG-CCUg -3'
miRNA:   3'- aaUUUGUAUCgCUCU--CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 9489 0.71 0.865985
Target:  5'- ---cGCGUcAGCGAGucAGCCAGCGucaggcgcggcGCCCu -3'
miRNA:   3'- aauuUGUA-UCGCUC--UCGGUCGC-----------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 1439 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 106310 0.69 0.931719
Target:  5'- --cGACAgcuGCGGcGGGCagGGCGACCCc -3'
miRNA:   3'- aauUUGUau-CGCU-CUCGg-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 150798 0.68 0.950878
Target:  5'- -gGGGCGUguggGGCaGGAGCgCAGCGACUg -3'
miRNA:   3'- aaUUUGUA----UCGcUCUCG-GUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 37111 0.68 0.958949
Target:  5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3'
miRNA:   3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 141464 0.68 0.965726
Target:  5'- -cGAGC--GGCGGGgccucuuuccaccGGCCgaGGCGGCCCg -3'
miRNA:   3'- aaUUUGuaUCGCUC-------------UCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 120142 0.68 0.96606
Target:  5'- -aGGACGgAGCGccGGCCGGCGAUgaCCg -3'
miRNA:   3'- aaUUUGUaUCGCucUCGGUCGCUG--GG- -5'
24375 5' -51.5 NC_005264.1 + 151341 0.67 0.975026
Target:  5'- ---cACAUGgGCaAGGGCCGcGCGGCCUu -3'
miRNA:   3'- aauuUGUAU-CGcUCUCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 48387 0.67 0.975026
Target:  5'- gUAGACuggGGCGucGGgCGGCGGCCa -3'
miRNA:   3'- aAUUUGua-UCGCucUCgGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 20892 0.66 0.982128
Target:  5'- gUUAAACAUgaGGCcu-GGCUcgGGCGGCCCa -3'
miRNA:   3'- -AAUUUGUA--UCGcucUCGG--UCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.