miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 94946 0.69 0.941809
Target:  5'- cUAcGCGUcGGUGGuGGGCCucGCGGCCCa -3'
miRNA:   3'- aAUuUGUA-UCGCU-CUCGGu-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 110496 0.69 0.931719
Target:  5'- -cGGACGUGuuGUGGGGcagcccGcCCAGCGACCCu -3'
miRNA:   3'- aaUUUGUAU--CGCUCU------C-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 162311 0.68 0.962622
Target:  5'- -----gAUGGCuGGGuGCuCGGCGGCCCc -3'
miRNA:   3'- aauuugUAUCG-CUCuCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 106310 0.69 0.931719
Target:  5'- --cGACAgcuGCGGcGGGCagGGCGACCCc -3'
miRNA:   3'- aauUUGUau-CGCU-CUCGg-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 114097 0.68 0.958949
Target:  5'- -gGAGCuuGUAGUc-GGGCCAGuCGGCCCu -3'
miRNA:   3'- aaUUUG--UAUCGcuCUCGGUC-GCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 66996 0.67 0.977342
Target:  5'- -cGAGCAacGGCGAGuGCUgccuggacggagcGGCGGCCUu -3'
miRNA:   3'- aaUUUGUa-UCGCUCuCGG-------------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 88957 0.7 0.908443
Target:  5'- ---uGCu--GCGAGAGUCGGCGACg- -3'
miRNA:   3'- aauuUGuauCGCUCUCGGUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 156138 0.68 0.958949
Target:  5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3'
miRNA:   3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 51411 0.66 0.990447
Target:  5'- ---uACAUGGCGuacGCCGGgGAgCCg -3'
miRNA:   3'- aauuUGUAUCGCucuCGGUCgCUgGG- -5'
24375 5' -51.5 NC_005264.1 + 67939 0.66 0.990447
Target:  5'- -----uGUAGCGGGGuucccggcGCCuGCGGCUCg -3'
miRNA:   3'- aauuugUAUCGCUCU--------CGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 33911 0.68 0.960447
Target:  5'- -aAGACAUGGCG-GAGCgAGCccacacgaacaugaGCCCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGgUCGc-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 129755 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 128865 0.67 0.975026
Target:  5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3'
miRNA:   3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 70379 0.67 0.975026
Target:  5'- aUGAACGgcucGGUG-GAGCUggagGGCGGCCUg -3'
miRNA:   3'- aAUUUGUa---UCGCuCUCGG----UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 158045 0.66 0.990447
Target:  5'- aUGGACcagGGCGuucGCCAaCGACCCa -3'
miRNA:   3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 135152 0.66 0.990447
Target:  5'- -cGAGCGUcGGCGAGgcagaGGCCAGCcgcguACCUc -3'
miRNA:   3'- aaUUUGUA-UCGCUC-----UCGGUCGc----UGGG- -5'
24375 5' -51.5 NC_005264.1 + 93007 0.68 0.960447
Target:  5'- ----cCGUAGCGGGggcagucaaggcaguGGCUAGUGGCCUc -3'
miRNA:   3'- aauuuGUAUCGCUC---------------UCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 132381 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 5082 0.69 0.931719
Target:  5'- -gGAACGUggguuGGCGAggaGAGCCAgucuGCGGCCg -3'
miRNA:   3'- aaUUUGUA-----UCGCU---CUCGGU----CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 157410 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.