miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 145841 0.66 0.987434
Target:  5'- -aAGACA-GGCGAGcugcgcguuauugGGCCaauGGCGGCCUc -3'
miRNA:   3'- aaUUUGUaUCGCUC-------------UCGG---UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 57991 0.66 0.985937
Target:  5'- ---cGCGcGGCGGccguGGCuCAGCGGCCCc -3'
miRNA:   3'- aauuUGUaUCGCUc---UCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 30501 0.66 0.985937
Target:  5'- -----gGUAGCGAG-GCCauugcgggaAGCGGCUCu -3'
miRNA:   3'- aauuugUAUCGCUCuCGG---------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 20143 0.66 0.985937
Target:  5'- -cAGGCgAUGGCGcgccGCCGGCG-CCCa -3'
miRNA:   3'- aaUUUG-UAUCGCucu-CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 115727 0.66 0.985937
Target:  5'- --cGGCAUGGUaGGGGGCgCGGCGAgCg -3'
miRNA:   3'- aauUUGUAUCG-CUCUCG-GUCGCUgGg -5'
24375 5' -51.5 NC_005264.1 + 76237 0.66 0.985937
Target:  5'- --cAACGUAGCGcuuggguguGGAGCC-GUGACUg -3'
miRNA:   3'- aauUUGUAUCGC---------UCUCGGuCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 10451 0.66 0.984119
Target:  5'- ----uCGUAGaCGAGGGCagAGUGACCg -3'
miRNA:   3'- aauuuGUAUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 30414 0.66 0.984119
Target:  5'- -cGAGCGUAGCGuuguacAGCC-GCGGCUUg -3'
miRNA:   3'- aaUUUGUAUCGCuc----UCGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 113870 0.66 0.984119
Target:  5'- -gGAAgAguucuGCGccuacugcuuGGAGCgCAGCGGCCCg -3'
miRNA:   3'- aaUUUgUau---CGC----------UCUCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 56594 0.66 0.984119
Target:  5'- --cAGCAggcGCGAGcGCCucGCGACCg -3'
miRNA:   3'- aauUUGUau-CGCUCuCGGu-CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 93870 0.66 0.982128
Target:  5'- cUAAGC-UGGCGAGccAGgCGGCgGACCUu -3'
miRNA:   3'- aAUUUGuAUCGCUC--UCgGUCG-CUGGG- -5'
24375 5' -51.5 NC_005264.1 + 64931 0.66 0.982128
Target:  5'- -gGAAgAaAGCGAGAGCCuucGCGagGCCg -3'
miRNA:   3'- aaUUUgUaUCGCUCUCGGu--CGC--UGGg -5'
24375 5' -51.5 NC_005264.1 + 20892 0.66 0.982128
Target:  5'- gUUAAACAUgaGGCcu-GGCUcgGGCGGCCCa -3'
miRNA:   3'- -AAUUUGUA--UCGcucUCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 92929 0.66 0.982128
Target:  5'- gUGAGCA-AG-GAGuGUCGGCGGCUCu -3'
miRNA:   3'- aAUUUGUaUCgCUCuCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 47010 0.67 0.979954
Target:  5'- ---cGCAUAGCGcggucaguccuGGGGCgAGCGACg- -3'
miRNA:   3'- aauuUGUAUCGC-----------UCUCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 40904 0.67 0.979726
Target:  5'- -cGAGCAUaguuaccuucggcGGCGcGGGCUAGCuucugaacaGACCCg -3'
miRNA:   3'- aaUUUGUA-------------UCGCuCUCGGUCG---------CUGGG- -5'
24375 5' -51.5 NC_005264.1 + 101606 0.67 0.97759
Target:  5'- aUUGAACGUGGCGuaguucucuGGGCUcuuGCcGCCCg -3'
miRNA:   3'- -AAUUUGUAUCGCu--------CUCGGu--CGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 150216 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 31189 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 133064 0.67 0.97759
Target:  5'- ---uACGUGGCGugcGAGCCgcgAGCGAgCUg -3'
miRNA:   3'- aauuUGUAUCGCu--CUCGG---UCGCUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.