Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24376 | 3' | -49.4 | NC_005264.1 | + | 90769 | 0.66 | 0.997892 |
Target: 5'- cGC-CGUgGCUGuGCAug-ACAGGGAUu -3' miRNA: 3'- -CGuGCAaCGACuCGUucaUGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 75410 | 0.66 | 0.998245 |
Target: 5'- uGCGCGgccGC-GGGCAGuGUACGGcGGGCc -3' miRNA: 3'- -CGUGCaa-CGaCUCGUU-CAUGUC-CUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 31715 | 0.66 | 0.998277 |
Target: 5'- cGCGCGggGCguacuuguucgcgucGuGUAAGaGCAGGGGCg -3' miRNA: 3'- -CGUGCaaCGa--------------CuCGUUCaUGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 92289 | 0.65 | 0.998461 |
Target: 5'- --uCGUaGCUcGGGUgccacgucuccgucGAGUACAGGAACa -3' miRNA: 3'- cguGCAaCGA-CUCG--------------UUCAUGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 10715 | 0.68 | 0.986918 |
Target: 5'- uGCGCGUcaGC-GAGCAAGcaaGCGGGGAa -3' miRNA: 3'- -CGUGCAa-CGaCUCGUUCa--UGUCCUUg -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 104166 | 0.68 | 0.9885 |
Target: 5'- aCGCG-UGCcuccuccAGCAAGUugAGGAGCu -3' miRNA: 3'- cGUGCaACGac-----UCGUUCAugUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 126784 | 1.13 | 0.00689 |
Target: 5'- aGCACGUUGCUGAGCAAGUACAGGAACu -3' miRNA: 3'- -CGUGCAACGACUCGUUCAUGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 154930 | 0.7 | 0.960672 |
Target: 5'- cGCGCGUUGCU-AGCcAGaGCgugGGGGACg -3' miRNA: 3'- -CGUGCAACGAcUCGuUCaUG---UCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 137837 | 0.7 | 0.967645 |
Target: 5'- gGCAUGcagcGcCUGAGCcgcaggGGGUACGGGGACa -3' miRNA: 3'- -CGUGCaa--C-GACUCG------UUCAUGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 95387 | 0.69 | 0.985174 |
Target: 5'- uCACGa-GCUGGccGCGcuGGUGCAGGGGCu -3' miRNA: 3'- cGUGCaaCGACU--CGU--UCAUGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 10322 | 0.66 | 0.997892 |
Target: 5'- aCGCGca-CUGAGCAAGcGC-GGAACg -3' miRNA: 3'- cGUGCaacGACUCGUUCaUGuCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 155264 | 0.71 | 0.948374 |
Target: 5'- cGCAgCGgcGCgGGGUAGGcgGCGGGGACg -3' miRNA: 3'- -CGU-GCaaCGaCUCGUUCa-UGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 153178 | 0.66 | 0.997007 |
Target: 5'- uGCACuuacUGCUGGGCcAAGcccugcuuCAGGAGCu -3' miRNA: 3'- -CGUGca--ACGACUCG-UUCau------GUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 123497 | 0.7 | 0.97078 |
Target: 5'- cGCGCgGUUGCUGGGCGAuGUGCucgcGGu-- -3' miRNA: 3'- -CGUG-CAACGACUCGUU-CAUGu---CCuug -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 120482 | 0.73 | 0.875779 |
Target: 5'- cGCAuCGgUGCgcgGAGUAGGUgGCGGGGGCg -3' miRNA: 3'- -CGU-GCaACGa--CUCGUUCA-UGUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 43146 | 0.67 | 0.996461 |
Target: 5'- aGCACGg-GUgGAGCGGGgagGgGGGGGCg -3' miRNA: 3'- -CGUGCaaCGaCUCGUUCa--UgUCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 23626 | 0.66 | 0.998245 |
Target: 5'- cGCugGcgauugGCUuaGAGCcauAGUACAGGAccgGCa -3' miRNA: 3'- -CGugCaa----CGA--CUCGu--UCAUGUCCU---UG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 3663 | 0.66 | 0.998245 |
Target: 5'- aGCugGggGCgacuGGCAuuGGUGCGGGGc- -3' miRNA: 3'- -CGugCaaCGac--UCGU--UCAUGUCCUug -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 129349 | 0.66 | 0.997892 |
Target: 5'- aCGCGca-CUGAGCAAGcGC-GGAACg -3' miRNA: 3'- cGUGCaacGACUCGUUCaUGuCCUUG- -5' |
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24376 | 3' | -49.4 | NC_005264.1 | + | 74039 | 0.66 | 0.997007 |
Target: 5'- aGCACuacuaUGCUGAGCAGau-CAGGAu- -3' miRNA: 3'- -CGUGca---ACGACUCGUUcauGUCCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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