miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 3' -49.4 NC_005264.1 + 10715 0.68 0.986918
Target:  5'- uGCGCGUcaGC-GAGCAAGcaaGCGGGGAa -3'
miRNA:   3'- -CGUGCAa-CGaCUCGUUCa--UGUCCUUg -5'
24376 3' -49.4 NC_005264.1 + 129741 0.68 0.986918
Target:  5'- uGCGCGUcaGC-GAGCAAGcaaGCGGGGAa -3'
miRNA:   3'- -CGUGCAa-CGaCUCGUUCa--UGUCCUUg -5'
24376 3' -49.4 NC_005264.1 + 95387 0.69 0.985174
Target:  5'- uCACGa-GCUGGccGCGcuGGUGCAGGGGCu -3'
miRNA:   3'- cGUGCaaCGACU--CGU--UCAUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 96526 0.69 0.983259
Target:  5'- uGCACGacGCcGcGCAacaggAGUGCAGGGACc -3'
miRNA:   3'- -CGUGCaaCGaCuCGU-----UCAUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 19548 0.69 0.978874
Target:  5'- -aACGUUGCcgGAGCGAGguaAGGAu- -3'
miRNA:   3'- cgUGCAACGa-CUCGUUCaugUCCUug -5'
24376 3' -49.4 NC_005264.1 + 5218 0.7 0.972554
Target:  5'- aCACGUUGCUguccauaaugcgcGAGCAGGacgcccugcugggcUACGGGGAa -3'
miRNA:   3'- cGUGCAACGA-------------CUCGUUC--------------AUGUCCUUg -5'
24376 3' -49.4 NC_005264.1 + 123497 0.7 0.97078
Target:  5'- cGCGCgGUUGCUGGGCGAuGUGCucgcGGu-- -3'
miRNA:   3'- -CGUG-CAACGACUCGUU-CAUGu---CCuug -5'
24376 3' -49.4 NC_005264.1 + 48035 0.7 0.967645
Target:  5'- gGCGCGUggccaaUGCgcaugGAGCAuuGgcCAGGGACa -3'
miRNA:   3'- -CGUGCA------ACGa----CUCGUu-CauGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 137837 0.7 0.967645
Target:  5'- gGCAUGcagcGcCUGAGCcgcaggGGGUACGGGGACa -3'
miRNA:   3'- -CGUGCaa--C-GACUCG------UUCAUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 154930 0.7 0.960672
Target:  5'- cGCGCGUUGCU-AGCcAGaGCgugGGGGACg -3'
miRNA:   3'- -CGUGCAACGAcUCGuUCaUG---UCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 155264 0.71 0.948374
Target:  5'- cGCAgCGgcGCgGGGUAGGcgGCGGGGACg -3'
miRNA:   3'- -CGU-GCaaCGaCUCGUUCa-UGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 85997 0.71 0.938895
Target:  5'- cGCGCuGUUGaUGGGCAAGgccauCAGGAAUu -3'
miRNA:   3'- -CGUG-CAACgACUCGUUCau---GUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 120482 0.73 0.875779
Target:  5'- cGCAuCGgUGCgcgGAGUAGGUgGCGGGGGCg -3'
miRNA:   3'- -CGU-GCaACGa--CUCGUUCA-UGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 126784 1.13 0.00689
Target:  5'- aGCACGUUGCUGAGCAAGUACAGGAACu -3'
miRNA:   3'- -CGUGCAACGACUCGUUCAUGUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.