Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24376 | 5' | -53.6 | NC_005264.1 | + | 91495 | 0.67 | 0.953653 |
Target: 5'- cCGCUgCGGGGUuucGGCGGcGUAgaaugccGCGCa -3' miRNA: 3'- aGCGA-GUCUCAuaaCCGCC-CGU-------UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 34611 | 0.67 | 0.949947 |
Target: 5'- uUUGUUCGGGGUG-UGG-GGGCGugucuGCGUc -3' miRNA: 3'- -AGCGAGUCUCAUaACCgCCCGU-----UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 103752 | 0.67 | 0.94102 |
Target: 5'- aUGCUUAG-GUucaugcugaGGCGGGCGGcCGCu -3' miRNA: 3'- aGCGAGUCuCAuaa------CCGCCCGUU-GCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 18615 | 0.66 | 0.961567 |
Target: 5'- aUGCUCaAGAGUGcgaaagugacgUGGUGGGguGcCGCc -3' miRNA: 3'- aGCGAG-UCUCAUa----------ACCGCCCguU-GCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 52328 | 0.66 | 0.973949 |
Target: 5'- -aGCuUCAGGGUcgcugGGCGGGC--UGCc -3' miRNA: 3'- agCG-AGUCUCAuaa--CCGCCCGuuGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 58051 | 0.66 | 0.973409 |
Target: 5'- cUCGCgaaAGAGgagacucgcgUGGUGGGCAuuucugGCGUu -3' miRNA: 3'- -AGCGag-UCUCaua-------ACCGCCCGU------UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 31178 | 0.66 | 0.97117 |
Target: 5'- cCGCcaaCGGucUGgcGGCGGGCAcCGCa -3' miRNA: 3'- aGCGa--GUCucAUaaCCGCCCGUuGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 162475 | 0.66 | 0.968184 |
Target: 5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3' miRNA: 3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 25910 | 0.66 | 0.964985 |
Target: 5'- -gGCgaaCAGA----UGGCGGGgGGCGCu -3' miRNA: 3'- agCGa--GUCUcauaACCGCCCgUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 100209 | 0.66 | 0.973949 |
Target: 5'- gCGCUUGGAc----GGCGGGCGAgaagaccuCGCa -3' miRNA: 3'- aGCGAGUCUcauaaCCGCCCGUU--------GCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 110364 | 0.66 | 0.968492 |
Target: 5'- -aGUUCgaGGAGUAUgcuaauaccgccgacGGCGGGCGcAUGCu -3' miRNA: 3'- agCGAG--UCUCAUAa--------------CCGCCCGU-UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 43448 | 0.66 | 0.968184 |
Target: 5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3' miRNA: 3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 155736 | 0.66 | 0.968184 |
Target: 5'- gCGCggGGGGUuaUGGUGGGC--CGCc -3' miRNA: 3'- aGCGagUCUCAuaACCGCCCGuuGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 30101 | 0.66 | 0.957925 |
Target: 5'- aUCGC---GAGUcgagauGCGGGCGGCGCg -3' miRNA: 3'- -AGCGaguCUCAuaac--CGCCCGUUGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 89445 | 0.66 | 0.964985 |
Target: 5'- cUUGgUCAGcgGGUGUUGGCuuGGCAgagccGCGCc -3' miRNA: 3'- -AGCgAGUC--UCAUAACCGc-CCGU-----UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 119289 | 0.66 | 0.961567 |
Target: 5'- gUUGCUCGcGGU---GGCuGGGCAGCuGCa -3' miRNA: 3'- -AGCGAGUcUCAuaaCCG-CCCGUUG-CG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 20524 | 0.66 | 0.957548 |
Target: 5'- aCGuCUCu--GUGUccGGCGGGCAcgaagaaGCGCg -3' miRNA: 3'- aGC-GAGucuCAUAa-CCGCCCGU-------UGCG- -5' |
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24376 | 5' | -53.6 | NC_005264.1 | + | 74075 | 0.66 | 0.966931 |
Target: 5'- aCGCggcaucCGGAGUAguguggucguacaUGGCGcGGuCGACGCu -3' miRNA: 3'- aGCGa-----GUCUCAUa------------ACCGC-CC-GUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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