miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 122637 0.7 0.841873
Target:  5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3'
miRNA:   3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 121682 0.68 0.920247
Target:  5'- cUCGuCUaCAGAGUccucUGGCcccgaccgcgaGGGCAGCGUg -3'
miRNA:   3'- -AGC-GA-GUCUCAua--ACCG-----------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 120489 0.72 0.743444
Target:  5'- gUGCgCGGAGUAggUGGCggGGGCGAgGCc -3'
miRNA:   3'- aGCGaGUCUCAUa-ACCG--CCCGUUgCG- -5'
24376 5' -53.6 NC_005264.1 + 119289 0.66 0.961567
Target:  5'- gUUGCUCGcGGU---GGCuGGGCAGCuGCa -3'
miRNA:   3'- -AGCGAGUcUCAuaaCCG-CCCGUUG-CG- -5'
24376 5' -53.6 NC_005264.1 + 116428 0.69 0.874581
Target:  5'- gUCGCUgGGGGcGUcUGGCcgcggGGGCGACGa -3'
miRNA:   3'- -AGCGAgUCUCaUA-ACCG-----CCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 110364 0.66 0.968492
Target:  5'- -aGUUCgaGGAGUAUgcuaauaccgccgacGGCGGGCGcAUGCu -3'
miRNA:   3'- agCGAG--UCUCAUAa--------------CCGCCCGU-UGCG- -5'
24376 5' -53.6 NC_005264.1 + 110255 0.67 0.949947
Target:  5'- aUGCUUAccGAGgacuacUGGCGGGCGauACGUu -3'
miRNA:   3'- aGCGAGU--CUCaua---ACCGCCCGU--UGCG- -5'
24376 5' -53.6 NC_005264.1 + 110137 0.7 0.859468
Target:  5'- gCGCUUuuGGg---GGCGGGCGGCGa -3'
miRNA:   3'- aGCGAGucUCauaaCCGCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 108703 0.74 0.641677
Target:  5'- -aGUUUAGcGUcggUGGUGGGCAGCGCc -3'
miRNA:   3'- agCGAGUCuCAua-ACCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 106854 0.73 0.682977
Target:  5'- cUCGUUCaucugcGGGGUcaugGGCGGGCAcgaACGCa -3'
miRNA:   3'- -AGCGAG------UCUCAuaa-CCGCCCGU---UGCG- -5'
24376 5' -53.6 NC_005264.1 + 103752 0.67 0.94102
Target:  5'- aUGCUUAG-GUucaugcugaGGCGGGCGGcCGCu -3'
miRNA:   3'- aGCGAGUCuCAuaa------CCGCCCGUU-GCG- -5'
24376 5' -53.6 NC_005264.1 + 100209 0.66 0.973949
Target:  5'- gCGCUUGGAc----GGCGGGCGAgaagaccuCGCa -3'
miRNA:   3'- aGCGAGUCUcauaaCCGCCCGUU--------GCG- -5'
24376 5' -53.6 NC_005264.1 + 94599 0.69 0.874581
Target:  5'- cCGCggcgCGGGcauGgcUUGGCGGuGCGGCGUg -3'
miRNA:   3'- aGCGa---GUCU---CauAACCGCC-CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 91495 0.67 0.953653
Target:  5'- cCGCUgCGGGGUuucGGCGGcGUAgaaugccGCGCa -3'
miRNA:   3'- aGCGA-GUCUCAuaaCCGCC-CGU-------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 90437 0.74 0.662377
Target:  5'- cUCGCcgUAGAGaucgcucaGGUGGGCGGCGCg -3'
miRNA:   3'- -AGCGa-GUCUCauaa----CCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 89445 0.66 0.964985
Target:  5'- cUUGgUCAGcgGGUGUUGGCuuGGCAgagccGCGCc -3'
miRNA:   3'- -AGCgAGUC--UCAUAACCGc-CCGU-----UGCG- -5'
24376 5' -53.6 NC_005264.1 + 84569 0.67 0.94102
Target:  5'- cCGCuugUCGGAGcgacGGCaaaGGGUAGCGCg -3'
miRNA:   3'- aGCG---AGUCUCauaaCCG---CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 81800 0.68 0.908392
Target:  5'- gCGCcagUgAGGGUAgacGGCGGGUAgGCGCc -3'
miRNA:   3'- aGCG---AgUCUCAUaa-CCGCCCGU-UGCG- -5'
24376 5' -53.6 NC_005264.1 + 74075 0.66 0.966931
Target:  5'- aCGCggcaucCGGAGUAguguggucguacaUGGCGcGGuCGACGCu -3'
miRNA:   3'- aGCGa-----GUCUCAUa------------ACCGC-CC-GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 72268 0.69 0.867133
Target:  5'- gCGCUgCAGAGgcguacUGGCcGGCAACGa -3'
miRNA:   3'- aGCGA-GUCUCaua---ACCGcCCGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.