miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 34611 0.67 0.949947
Target:  5'- uUUGUUCGGGGUG-UGG-GGGCGugucuGCGUc -3'
miRNA:   3'- -AGCGAGUCUCAUaACCgCCCGU-----UGCG- -5'
24376 5' -53.6 NC_005264.1 + 110255 0.67 0.949947
Target:  5'- aUGCUUAccGAGgacuacUGGCGGGCGauACGUu -3'
miRNA:   3'- aGCGAGU--CUCaua---ACCGCCCGU--UGCG- -5'
24376 5' -53.6 NC_005264.1 + 35690 0.67 0.949947
Target:  5'- -aGCU-AGAGgacguguuUGUUGGCGGGUAcuugguaauuuACGCg -3'
miRNA:   3'- agCGAgUCUC--------AUAACCGCCCGU-----------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 67169 0.67 0.949947
Target:  5'- aCGaa-GGGGUGgaUGGCGGccuGCAGCGCu -3'
miRNA:   3'- aGCgagUCUCAUa-ACCGCC---CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 153638 0.67 0.949947
Target:  5'- uUUGUUCGGGGUG-UGG-GGGCGugucuGCGUc -3'
miRNA:   3'- -AGCGAGUCUCAUaACCgCCCGU-----UGCG- -5'
24376 5' -53.6 NC_005264.1 + 136465 0.67 0.94737
Target:  5'- gCGCUCAGAGac--GGCGccgcgcagccugccGCGGCGCa -3'
miRNA:   3'- aGCGAGUCUCauaaCCGCc-------------CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 56247 0.67 0.945604
Target:  5'- -gGCUUuugucGAGg--UGGCGGGCAuCGUc -3'
miRNA:   3'- agCGAGu----CUCauaACCGCCCGUuGCG- -5'
24376 5' -53.6 NC_005264.1 + 3289 0.67 0.945156
Target:  5'- gCGC-CAGAGUcgUGagcucgcGCGGGaucGCGCg -3'
miRNA:   3'- aGCGaGUCUCAuaAC-------CGCCCgu-UGCG- -5'
24376 5' -53.6 NC_005264.1 + 35158 0.67 0.94102
Target:  5'- -gGCcgCGGuGUGUcUGGUGGGCAAgGUu -3'
miRNA:   3'- agCGa-GUCuCAUA-ACCGCCCGUUgCG- -5'
24376 5' -53.6 NC_005264.1 + 103752 0.67 0.94102
Target:  5'- aUGCUUAG-GUucaugcugaGGCGGGCGGcCGCu -3'
miRNA:   3'- aGCGAGUCuCAuaa------CCGCCCGUU-GCG- -5'
24376 5' -53.6 NC_005264.1 + 84569 0.67 0.94102
Target:  5'- cCGCuugUCGGAGcgacGGCaaaGGGUAGCGCg -3'
miRNA:   3'- aGCG---AGUCUCauaaCCG---CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 52197 0.68 0.925807
Target:  5'- gUGCUgAGGGccguggGGCGcGGUGGCGCg -3'
miRNA:   3'- aGCGAgUCUCauaa--CCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 2655 0.68 0.920247
Target:  5'- cUCGuCUaCAGAGUccucUGGCcccgaccgcgaGGGCAGCGUg -3'
miRNA:   3'- -AGC-GA-GUCUCAua--ACCG-----------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 48709 0.68 0.920247
Target:  5'- gUCGCUCgcgGGAGaugaGGCGgccGGCGAUGCu -3'
miRNA:   3'- -AGCGAG---UCUCauaaCCGC---CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 121682 0.68 0.920247
Target:  5'- cUCGuCUaCAGAGUccucUGGCcccgaccgcgaGGGCAGCGUg -3'
miRNA:   3'- -AGC-GA-GUCUCAua--ACCG-----------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 364 0.68 0.919677
Target:  5'- aUGC-CAGAccuUAUUGGUcuuugggGGGCAGCGCc -3'
miRNA:   3'- aGCGaGUCUc--AUAACCG-------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 38307 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5'
24376 5' -53.6 NC_005264.1 + 81800 0.68 0.908392
Target:  5'- gCGCcagUgAGGGUAgacGGCGGGUAgGCGCc -3'
miRNA:   3'- aGCG---AgUCUCAUaa-CCGCCCGU-UGCG- -5'
24376 5' -53.6 NC_005264.1 + 125839 0.68 0.908392
Target:  5'- aCGgUCAGGGUGUUGcCGGagGCGGCGg -3'
miRNA:   3'- aGCgAGUCUCAUAACcGCC--CGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 157334 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.